miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13253 3' -49.8 NC_003401.1 + 121538 0.66 0.994129
Target:  5'- aCAGGCGGugaGCCacacAGAcCACCCCAc -3'
miRNA:   3'- -GUUCGCC---UGGguuuUUUuGUGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 72614 0.66 0.994129
Target:  5'- --cGCGGGCagauGGAAGACGCCCUc- -3'
miRNA:   3'- guuCGCCUGggu-UUUUUUGUGGGGuu -5'
13253 3' -49.8 NC_003401.1 + 58305 0.66 0.994038
Target:  5'- aGGGUGGguaagauACCCGcc--AGCGCCCCAAu -3'
miRNA:   3'- gUUCGCC-------UGGGUuuuuUUGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 115073 0.66 0.993173
Target:  5'- -cGGgGGACCU------GCACCCCAc -3'
miRNA:   3'- guUCgCCUGGGuuuuuuUGUGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 115054 0.66 0.993173
Target:  5'- -cGGgGGACCU------GCACCCCAc -3'
miRNA:   3'- guUCgCCUGGGuuuuuuUGUGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 115396 0.66 0.993173
Target:  5'- -cGGgGGACCU------GCACCCCAc -3'
miRNA:   3'- guUCgCCUGGGuuuuuuUGUGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 127014 0.66 0.993173
Target:  5'- cCAGGCaGGACgCGAcgGAACGCCUgGu -3'
miRNA:   3'- -GUUCG-CCUGgGUUuuUUUGUGGGgUu -5'
13253 3' -49.8 NC_003401.1 + 79946 0.66 0.993071
Target:  5'- --cGCGGuugcguuGCCCGGGGAAcACGCCCUg- -3'
miRNA:   3'- guuCGCC-------UGGGUUUUUU-UGUGGGGuu -5'
13253 3' -49.8 NC_003401.1 + 118257 0.66 0.992096
Target:  5'- -cAGCGGugUCAGcgGAACAuauucuCCCCGg -3'
miRNA:   3'- guUCGCCugGGUUuuUUUGU------GGGGUu -5'
13253 3' -49.8 NC_003401.1 + 132667 0.66 0.992096
Target:  5'- gGGGCcgGGGCCCG---GGGCGCCUCGg -3'
miRNA:   3'- gUUCG--CCUGGGUuuuUUUGUGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 118781 0.66 0.992096
Target:  5'- gCAAGCGGcgcgccuCCCGuucaccGAccGGCACCCCGu -3'
miRNA:   3'- -GUUCGCCu------GGGU------UUuuUUGUGGGGUu -5'
13253 3' -49.8 NC_003401.1 + 125546 0.66 0.992096
Target:  5'- ---cCGGACCCA---AAAC-CCCCGAc -3'
miRNA:   3'- guucGCCUGGGUuuuUUUGuGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 72605 0.66 0.99089
Target:  5'- gGAGcCGGACCUGGugGGAU-CCCCAGa -3'
miRNA:   3'- gUUC-GCCUGGGUUuuUUUGuGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 53016 0.66 0.989542
Target:  5'- gAGGCGGACCCu---AGAU-CUCCGAu -3'
miRNA:   3'- gUUCGCCUGGGuuuuUUUGuGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 89023 0.66 0.989542
Target:  5'- gCGAGCGGACCCucAGAGAugGCg---- -3'
miRNA:   3'- -GUUCGCCUGGGu-UUUUUugUGggguu -5'
13253 3' -49.8 NC_003401.1 + 50506 0.67 0.988044
Target:  5'- aAAGC--ACCCGAAAAGACACaCCAGu -3'
miRNA:   3'- gUUCGccUGGGUUUUUUUGUGgGGUU- -5'
13253 3' -49.8 NC_003401.1 + 53349 0.67 0.988044
Target:  5'- uGGGCGGAUUCGGAGgAAGCGuCCgCCAAc -3'
miRNA:   3'- gUUCGCCUGGGUUUU-UUUGU-GG-GGUU- -5'
13253 3' -49.8 NC_003401.1 + 69947 0.67 0.986385
Target:  5'- -uAGCGGccacggaucGCCuUGAAAGAugACCCCAAg -3'
miRNA:   3'- guUCGCC---------UGG-GUUUUUUugUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 112103 0.67 0.986385
Target:  5'- --uGgGGACCCcGAuauGCACCUCAAa -3'
miRNA:   3'- guuCgCCUGGGuUUuuuUGUGGGGUU- -5'
13253 3' -49.8 NC_003401.1 + 17509 0.67 0.986385
Target:  5'- gGAGuCGGACCCuggcguAGC-CCCCGu -3'
miRNA:   3'- gUUC-GCCUGGGuuuuu-UUGuGGGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.