miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13265 5' -58.9 NC_003401.1 + 132682 0.66 0.821128
Target:  5'- -gGGCCccgGGCCcGGGGgGCGucggggCGCGGc -3'
miRNA:   3'- ggCCGG---CCGGuUUCCaCGCua----GCGCC- -5'
13265 5' -58.9 NC_003401.1 + 106187 0.66 0.812721
Target:  5'- aCCGGgCGGCUucguguGGUGUGaAUCGguaGGa -3'
miRNA:   3'- -GGCCgGCCGGuuu---CCACGC-UAGCg--CC- -5'
13265 5' -58.9 NC_003401.1 + 109201 0.66 0.804159
Target:  5'- aUCGGCCGGUCGuuguuAGaG-GCGuacgCGUGGg -3'
miRNA:   3'- -GGCCGGCCGGUu----UC-CaCGCua--GCGCC- -5'
13265 5' -58.9 NC_003401.1 + 29980 0.66 0.804159
Target:  5'- aCCGGggGGCgAuGGGUGCGAaaggaUgGCGGc -3'
miRNA:   3'- -GGCCggCCGgUuUCCACGCU-----AgCGCC- -5'
13265 5' -58.9 NC_003401.1 + 107269 0.66 0.793691
Target:  5'- aCCGGCCGuCCGuucuGGGGaGCGuguauugaaugCGCGGg -3'
miRNA:   3'- -GGCCGGCcGGU----UUCCaCGCua---------GCGCC- -5'
13265 5' -58.9 NC_003401.1 + 66879 0.66 0.786601
Target:  5'- gCGGCU-GUCAAAGGUGCGcgaGCGc -3'
miRNA:   3'- gGCCGGcCGGUUUCCACGCuagCGCc -5'
13265 5' -58.9 NC_003401.1 + 856 0.66 0.777621
Target:  5'- -gGGCUGGCCAGGGGaaacaguaagGCuGAUUGCu- -3'
miRNA:   3'- ggCCGGCCGGUUUCCa---------CG-CUAGCGcc -5'
13265 5' -58.9 NC_003401.1 + 87604 0.66 0.777621
Target:  5'- gCCGcUCGGUCAGAGGUauugaauacGCGAgaUgGCGGa -3'
miRNA:   3'- -GGCcGGCCGGUUUCCA---------CGCU--AgCGCC- -5'
13265 5' -58.9 NC_003401.1 + 772 0.67 0.768518
Target:  5'- gCuGCCGGCCAGcuGcGUGCGAggGCGu -3'
miRNA:   3'- gGcCGGCCGGUUu-C-CACGCUagCGCc -5'
13265 5' -58.9 NC_003401.1 + 15040 0.67 0.768518
Target:  5'- uCUGGCC-GCCAGgcGGGgcgugGCGcgCGCGc -3'
miRNA:   3'- -GGCCGGcCGGUU--UCCa----CGCuaGCGCc -5'
13265 5' -58.9 NC_003401.1 + 133487 0.67 0.768518
Target:  5'- gCuGCCGGCCAGcuGcGUGCGAggGCGu -3'
miRNA:   3'- gGcCGGCCGGUUu-C-CACGCUagCGCc -5'
13265 5' -58.9 NC_003401.1 + 11764 0.67 0.768518
Target:  5'- cCCGGCguUGGCUucgcGGUgGUGGUCGCGc -3'
miRNA:   3'- -GGCCG--GCCGGuuu-CCA-CGCUAGCGCc -5'
13265 5' -58.9 NC_003401.1 + 23931 0.67 0.768518
Target:  5'- aCCGGCgCGGCCcucg--GUGAUUGaCGGg -3'
miRNA:   3'- -GGCCG-GCCGGuuuccaCGCUAGC-GCC- -5'
13265 5' -58.9 NC_003401.1 + 132493 0.67 0.7593
Target:  5'- cCCGGuCCGGCCGAGcccGGcgGCGc-CGCGc -3'
miRNA:   3'- -GGCC-GGCCGGUUU---CCa-CGCuaGCGCc -5'
13265 5' -58.9 NC_003401.1 + 121152 0.67 0.749977
Target:  5'- gCGGCgGGCgCGGGGGgcGCGGggggCGCGc -3'
miRNA:   3'- gGCCGgCCG-GUUUCCa-CGCUa---GCGCc -5'
13265 5' -58.9 NC_003401.1 + 22336 0.67 0.7481
Target:  5'- gCGGCCGuGCCAAGGGcucaaaaUGCGAcuuagaaacacccUCGaCGu -3'
miRNA:   3'- gGCCGGC-CGGUUUCC-------ACGCU-------------AGC-GCc -5'
13265 5' -58.9 NC_003401.1 + 23815 0.67 0.740554
Target:  5'- aCCGGCgCGGCCAuuGGa-CGcUgGCGGc -3'
miRNA:   3'- -GGCCG-GCCGGUuuCCacGCuAgCGCC- -5'
13265 5' -58.9 NC_003401.1 + 126966 0.67 0.740554
Target:  5'- gCGGCCGGcCCAGGGGUcCcacuUCGCa- -3'
miRNA:   3'- gGCCGGCC-GGUUUCCAcGcu--AGCGcc -5'
13265 5' -58.9 NC_003401.1 + 127114 0.67 0.740554
Target:  5'- gUCGGUCGG-CGAGGGUGCcuguUCGCc- -3'
miRNA:   3'- -GGCCGGCCgGUUUCCACGcu--AGCGcc -5'
13265 5' -58.9 NC_003401.1 + 18442 0.67 0.731043
Target:  5'- gCGGCggCGGCCAcaAGGGUGUcucuuuuuauaGUCGUGGg -3'
miRNA:   3'- gGCCG--GCCGGU--UUCCACGc----------UAGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.