miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13273 5' -50.5 NC_003409.1 + 67922 0.66 0.991542
Target:  5'- ---uCGGACUcuGAUAGcGAUGACAGuUCCa -3'
miRNA:   3'- uuucGUCUGG--UUGUC-CUACUGUC-AGG- -5'
13273 5' -50.5 NC_003409.1 + 108892 0.66 0.991542
Target:  5'- --uGCAGGCCAGCuAGcuggGGCgAGUCCc -3'
miRNA:   3'- uuuCGUCUGGUUG-UCcua-CUG-UCAGG- -5'
13273 5' -50.5 NC_003409.1 + 37920 0.66 0.991542
Target:  5'- -uGGCAuGGCCcuuCAGaGAUGGCAGugaaUCCg -3'
miRNA:   3'- uuUCGU-CUGGuu-GUC-CUACUGUC----AGG- -5'
13273 5' -50.5 NC_003409.1 + 125538 0.66 0.990286
Target:  5'- -cAGCGGAgCCAcagcaGCAGGAUGAgCAG-Ca -3'
miRNA:   3'- uuUCGUCU-GGU-----UGUCCUACU-GUCaGg -5'
13273 5' -50.5 NC_003409.1 + 107629 0.66 0.990286
Target:  5'- -cAGCGGGCC-GCAGGAcGGCgaAGUUg -3'
miRNA:   3'- uuUCGUCUGGuUGUCCUaCUG--UCAGg -5'
13273 5' -50.5 NC_003409.1 + 37020 0.66 0.990286
Target:  5'- cAAAGCucGAUCAcgACGGGAUGAU-GUCUc -3'
miRNA:   3'- -UUUCGu-CUGGU--UGUCCUACUGuCAGG- -5'
13273 5' -50.5 NC_003409.1 + 6385 0.66 0.990286
Target:  5'- -cAGUGGGCCAgGCGGGGgugccaugGACGG-CCg -3'
miRNA:   3'- uuUCGUCUGGU-UGUCCUa-------CUGUCaGG- -5'
13273 5' -50.5 NC_003409.1 + 132584 0.66 0.987337
Target:  5'- --uGCuGGCCGAgAGGGUGGC-GcCCa -3'
miRNA:   3'- uuuCGuCUGGUUgUCCUACUGuCaGG- -5'
13273 5' -50.5 NC_003409.1 + 115543 0.66 0.985625
Target:  5'- uGAAGCAGAaguuGCAGG-UGAUGGUgCCu -3'
miRNA:   3'- -UUUCGUCUggu-UGUCCuACUGUCA-GG- -5'
13273 5' -50.5 NC_003409.1 + 93794 0.66 0.985078
Target:  5'- cAAAGCAGcCCAGgccaguucagucucCGGGAuuucUGGCAGcCCg -3'
miRNA:   3'- -UUUCGUCuGGUU--------------GUCCU----ACUGUCaGG- -5'
13273 5' -50.5 NC_003409.1 + 122042 0.67 0.983741
Target:  5'- gGAAGCggguuGGACUGGCAGGGUGGgAGg-- -3'
miRNA:   3'- -UUUCG-----UCUGGUUGUCCUACUgUCagg -5'
13273 5' -50.5 NC_003409.1 + 48585 0.67 0.983741
Target:  5'- -cAGCAGAuuuucCCAcucagugugguuACGGGAUG-CGGUCUg -3'
miRNA:   3'- uuUCGUCU-----GGU------------UGUCCUACuGUCAGG- -5'
13273 5' -50.5 NC_003409.1 + 115914 0.67 0.981676
Target:  5'- gGAGGCAGAC-----GGAUG-CAGUCCc -3'
miRNA:   3'- -UUUCGUCUGguuguCCUACuGUCAGG- -5'
13273 5' -50.5 NC_003409.1 + 45749 0.67 0.981676
Target:  5'- aGGAGCGGAU--GCAGuGUGGCAG-CCa -3'
miRNA:   3'- -UUUCGUCUGguUGUCcUACUGUCaGG- -5'
13273 5' -50.5 NC_003409.1 + 21781 0.67 0.981676
Target:  5'- -cAGC-GACgAGCAGGAUGcccuuGguGUCCa -3'
miRNA:   3'- uuUCGuCUGgUUGUCCUAC-----UguCAGG- -5'
13273 5' -50.5 NC_003409.1 + 81011 0.67 0.979421
Target:  5'- -cGGCAGACgGGCAGGucaa-AGUCUa -3'
miRNA:   3'- uuUCGUCUGgUUGUCCuacugUCAGG- -5'
13273 5' -50.5 NC_003409.1 + 8750 0.67 0.979421
Target:  5'- --cGCAGGCgCGGCgcacucgaGGGGUGACAccuuucagacGUCCa -3'
miRNA:   3'- uuuCGUCUG-GUUG--------UCCUACUGU----------CAGG- -5'
13273 5' -50.5 NC_003409.1 + 128018 0.67 0.978946
Target:  5'- cAAAGCAGACacgccuucuuCAGuuuuuAUGGCAGUCCu -3'
miRNA:   3'- -UUUCGUCUGguu-------GUCc----UACUGUCAGG- -5'
13273 5' -50.5 NC_003409.1 + 108762 0.67 0.976965
Target:  5'- --uGguGGCCAACAGGAgGcCGG-CCu -3'
miRNA:   3'- uuuCguCUGGUUGUCCUaCuGUCaGG- -5'
13273 5' -50.5 NC_003409.1 + 116566 0.67 0.976708
Target:  5'- cGGGCgGGACCGaccgagGCGGGAUGACAagcaucuucugauGUCUc -3'
miRNA:   3'- uUUCG-UCUGGU------UGUCCUACUGU-------------CAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.