miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13277 5' -57.4 NC_003409.1 + 102697 0.66 0.851001
Target:  5'- cGGCGcCUCCccauguGGUcuuGACCGAGAucucgaagaUGGCCc -3'
miRNA:   3'- -CCGUcGAGGu-----CCG---CUGGUUCU---------ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 133126 0.66 0.851001
Target:  5'- -cCAGCUUCAGG-GucuCCAAGAUGcGCa -3'
miRNA:   3'- ccGUCGAGGUCCgCu--GGUUCUAC-CGg -5'
13277 5' -57.4 NC_003409.1 + 109274 0.66 0.851001
Target:  5'- cGguGUUCCGGGCaGACCccguccAGGcacggGGCCc -3'
miRNA:   3'- cCguCGAGGUCCG-CUGGu-----UCUa----CCGG- -5'
13277 5' -57.4 NC_003409.1 + 57081 0.66 0.851001
Target:  5'- --gGGUUCgGGGCGuCCGucucuGGUGGCUg -3'
miRNA:   3'- ccgUCGAGgUCCGCuGGUu----CUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 7655 0.66 0.843024
Target:  5'- aGCAGUcucugucuccgUCgCAGGUGGcauCCGAG-UGGCCa -3'
miRNA:   3'- cCGUCG-----------AG-GUCCGCU---GGUUCuACCGG- -5'
13277 5' -57.4 NC_003409.1 + 55012 0.66 0.843024
Target:  5'- uGC-GCUCCuucGGGaGGCUGuAGAUGGCCu -3'
miRNA:   3'- cCGuCGAGG---UCCgCUGGU-UCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 32156 0.66 0.843024
Target:  5'- -cCAGCUCUAggaaggcuGGCGACgu-GAUGGCUc -3'
miRNA:   3'- ccGUCGAGGU--------CCGCUGguuCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 118315 0.66 0.834856
Target:  5'- gGGguGCgccgcgCCGGGUucCUggGGUGcGCCg -3'
miRNA:   3'- -CCguCGa-----GGUCCGcuGGuuCUAC-CGG- -5'
13277 5' -57.4 NC_003409.1 + 113010 0.66 0.834856
Target:  5'- gGGCGacgcGCUCCaAGGCcuCCcGGA-GGCCg -3'
miRNA:   3'- -CCGU----CGAGG-UCCGcuGGuUCUaCCGG- -5'
13277 5' -57.4 NC_003409.1 + 118407 0.66 0.834856
Target:  5'- gGGguGCgccgcgCCGGGUucCUggGGUGcGCCg -3'
miRNA:   3'- -CCguCGa-----GGUCCGcuGGuuCUAC-CGG- -5'
13277 5' -57.4 NC_003409.1 + 80628 0.66 0.834856
Target:  5'- cGGCacuguuGGCUaauGGUGGCCAacAGGcUGGCCg -3'
miRNA:   3'- -CCG------UCGAgguCCGCUGGU--UCU-ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 109488 0.66 0.834856
Target:  5'- cGGCGuGCUCCGGcucccGUGGgcCCAAGAcGGCg -3'
miRNA:   3'- -CCGU-CGAGGUC-----CGCU--GGUUCUaCCGg -5'
13277 5' -57.4 NC_003409.1 + 118361 0.66 0.834856
Target:  5'- gGGguGCgccgcgCCGGGUucCUggGGUGcGCCg -3'
miRNA:   3'- -CCguCGa-----GGUCCGcuGGuuCUAC-CGG- -5'
13277 5' -57.4 NC_003409.1 + 24018 0.66 0.826504
Target:  5'- gGGUGGUUUCGguagauGGgGGCCGGGAggauggGGCCc -3'
miRNA:   3'- -CCGUCGAGGU------CCgCUGGUUCUa-----CCGG- -5'
13277 5' -57.4 NC_003409.1 + 97186 0.66 0.826504
Target:  5'- cGCAGaggUCCAGGCGcuguUCAGGGaGGCa -3'
miRNA:   3'- cCGUCg--AGGUCCGCu---GGUUCUaCCGg -5'
13277 5' -57.4 NC_003409.1 + 70883 0.66 0.826504
Target:  5'- --gAGCUUgGGGgGGCaGAGAUGGCg -3'
miRNA:   3'- ccgUCGAGgUCCgCUGgUUCUACCGg -5'
13277 5' -57.4 NC_003409.1 + 85879 0.66 0.826504
Target:  5'- aGCGGaUCCGcGGUGA-UAGGAUGGCUa -3'
miRNA:   3'- cCGUCgAGGU-CCGCUgGUUCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 133843 0.66 0.817976
Target:  5'- uGGCGGUg-CAGGCuucaACCGGGGacaauuauaacgUGGCCa -3'
miRNA:   3'- -CCGUCGagGUCCGc---UGGUUCU------------ACCGG- -5'
13277 5' -57.4 NC_003409.1 + 8881 0.66 0.817976
Target:  5'- aGCAGaccaaCAGGaUGAcaguccCCAGGGUGGCCa -3'
miRNA:   3'- cCGUCgag--GUCC-GCU------GGUUCUACCGG- -5'
13277 5' -57.4 NC_003409.1 + 62661 0.66 0.80928
Target:  5'- cGGaCAGCUCguaaacaaAGGCGGCC---GUGGCa -3'
miRNA:   3'- -CC-GUCGAGg-------UCCGCUGGuucUACCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.