miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13291 5' -63.4 NC_003409.1 + 110087 0.66 0.601102
Target:  5'- -cGCCagagcguuccugCGCCUGGCCgACCaggcGCuCGCCGGu -3'
miRNA:   3'- ccCGG------------GUGGACCGG-UGGa---UG-GCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 74162 0.68 0.443736
Target:  5'- uGGGUguugUCGCCUcuGCCGCCguaGCCGCCGc -3'
miRNA:   3'- -CCCG----GGUGGAc-CGGUGGa--UGGCGGCc -5'
13291 5' -63.4 NC_003409.1 + 90446 0.69 0.410035
Target:  5'- aGGGCUCAauc-GCCGCCUcgGCUGUCGGg -3'
miRNA:   3'- -CCCGGGUggacCGGUGGA--UGGCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 67977 0.69 0.393792
Target:  5'- aGGGCCCuCgUGGCgcccCCUGCgCGCCGc -3'
miRNA:   3'- -CCCGGGuGgACCGgu--GGAUG-GCGGCc -5'
13291 5' -63.4 NC_003409.1 + 43697 0.69 0.385828
Target:  5'- cGGa-CGCC-GGCCACCUGCUGCCc- -3'
miRNA:   3'- cCCggGUGGaCCGGUGGAUGGCGGcc -5'
13291 5' -63.4 NC_003409.1 + 133625 0.7 0.370224
Target:  5'- gGGGCCCucaccgGCCUGuauGCCACCgaaccgGCC-CUGGg -3'
miRNA:   3'- -CCCGGG------UGGAC---CGGUGGa-----UGGcGGCC- -5'
13291 5' -63.4 NC_003409.1 + 24736 0.72 0.279621
Target:  5'- gGGGCgCGCCggGGCU-CCUgggguGCUGCCGGg -3'
miRNA:   3'- -CCCGgGUGGa-CCGGuGGA-----UGGCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 107956 0.8 0.081711
Target:  5'- -uGCCCACCgUGGCCugCUGCaaauCGCCGGa -3'
miRNA:   3'- ccCGGGUGG-ACCGGugGAUG----GCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 35411 1.11 0.000493
Target:  5'- cGGGCCCACCUGGCCACCUACCGCCGGc -3'
miRNA:   3'- -CCCGGGUGGACCGGUGGAUGGCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 23799 0.68 0.443736
Target:  5'- uGGGuucaCCCACCUGGguaUACCUACUggauuacccaGCUGGg -3'
miRNA:   3'- -CCC----GGGUGGACCg--GUGGAUGG----------CGGCC- -5'
13291 5' -63.4 NC_003409.1 + 108787 0.67 0.495224
Target:  5'- uGGGCCUGgCcGGCCACCgugucuauggugGCCaacaggagGCCGGc -3'
miRNA:   3'- -CCCGGGUgGaCCGGUGGa-----------UGG--------CGGCC- -5'
13291 5' -63.4 NC_003409.1 + 40697 0.67 0.5332
Target:  5'- uGGCgCCACCgaacGGCCGCgUccaacgagcagacACCGCCa- -3'
miRNA:   3'- cCCG-GGUGGa---CCGGUGgA-------------UGGCGGcc -5'
13291 5' -63.4 NC_003409.1 + 88094 0.66 0.601102
Target:  5'- aGGCCUACCgGGCaCGgC-GCCGCCc- -3'
miRNA:   3'- cCCGGGUGGaCCG-GUgGaUGGCGGcc -5'
13291 5' -63.4 NC_003409.1 + 54955 0.66 0.591428
Target:  5'- aGGCCgGCC-GGCCACUgcagauUgGCUGGa -3'
miRNA:   3'- cCCGGgUGGaCCGGUGGau----GgCGGCC- -5'
13291 5' -63.4 NC_003409.1 + 55188 0.66 0.591428
Target:  5'- gGGGUCaCACa-GGCCAUCUACaGCCu- -3'
miRNA:   3'- -CCCGG-GUGgaCCGGUGGAUGgCGGcc -5'
13291 5' -63.4 NC_003409.1 + 119813 0.66 0.58178
Target:  5'- cGGGUgCACggGGUCACCUccaggucacGCCGCUaGGu -3'
miRNA:   3'- -CCCGgGUGgaCCGGUGGA---------UGGCGG-CC- -5'
13291 5' -63.4 NC_003409.1 + 42859 0.66 0.58178
Target:  5'- aGGGCCC-CCUacuacuGCCACCgAgCGCCu- -3'
miRNA:   3'- -CCCGGGuGGAc-----CGGUGGaUgGCGGcc -5'
13291 5' -63.4 NC_003409.1 + 121553 0.66 0.562588
Target:  5'- aGGUCCAagcgacaaccgcCCgUGGCCACaacGCCGCCuGGu -3'
miRNA:   3'- cCCGGGU------------GG-ACCGGUGga-UGGCGG-CC- -5'
13291 5' -63.4 NC_003409.1 + 92123 0.66 0.556862
Target:  5'- aGGGuCCCGguacgcgucccuguuUCUgGGCCGCCgGCCGUCGc -3'
miRNA:   3'- -CCC-GGGU---------------GGA-CCGGUGGaUGGCGGCc -5'
13291 5' -63.4 NC_003409.1 + 113608 0.67 0.53414
Target:  5'- aGGCaCCugUUGGaCCGCCcgUCGCUGGc -3'
miRNA:   3'- cCCG-GGugGACC-GGUGGauGGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.