miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13295 5' -56.6 NC_003409.1 + 35925 0.66 0.910943
Target:  5'- aCCGCUcagGGACGGCgGCuuugccuuuaGUCCuAgGGGCg -3'
miRNA:   3'- -GGUGG---CUUGCCGgCG----------CAGGuUgCUCG- -5'
13295 5' -56.6 NC_003409.1 + 31127 0.66 0.904937
Target:  5'- cCCGCUGAACccacccCCGCcUCCAGCacgcaGAGCa -3'
miRNA:   3'- -GGUGGCUUGcc----GGCGcAGGUUG-----CUCG- -5'
13295 5' -56.6 NC_003409.1 + 27675 0.66 0.904937
Target:  5'- uCCAgUCGGuGCGGCCuGCG-CCGGCGucGCu -3'
miRNA:   3'- -GGU-GGCU-UGCCGG-CGCaGGUUGCu-CG- -5'
13295 5' -56.6 NC_003409.1 + 104940 0.66 0.904937
Target:  5'- uCCACCGuaucccGCuGCCuGC-UCUGGCGGGCg -3'
miRNA:   3'- -GGUGGCu-----UGcCGG-CGcAGGUUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 110013 0.66 0.901225
Target:  5'- gCGCCGGGCGccaccgccucccgccGCgGCGUCU--UGGGCg -3'
miRNA:   3'- gGUGGCUUGC---------------CGgCGCAGGuuGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 81275 0.66 0.898705
Target:  5'- gCCACC-AugGGCUcCGacCCAACGAcGCa -3'
miRNA:   3'- -GGUGGcUugCCGGcGCa-GGUUGCU-CG- -5'
13295 5' -56.6 NC_003409.1 + 109104 0.66 0.898705
Target:  5'- gCCAcugucCCGGAgcCGGCUGCGUCUGGcCGAuGUg -3'
miRNA:   3'- -GGU-----GGCUU--GCCGGCGCAGGUU-GCU-CG- -5'
13295 5' -56.6 NC_003409.1 + 13886 0.66 0.898705
Target:  5'- -aGCCGAGCgucaaGGCCGCGgCCAAgcuuauuuCGGGg -3'
miRNA:   3'- ggUGGCUUG-----CCGGCGCaGGUU--------GCUCg -5'
13295 5' -56.6 NC_003409.1 + 133059 0.66 0.898705
Target:  5'- aCCACCGG--GGCCGgGUCauGCGAu- -3'
miRNA:   3'- -GGUGGCUugCCGGCgCAGguUGCUcg -5'
13295 5' -56.6 NC_003409.1 + 116407 0.66 0.898705
Target:  5'- cCCGCCu-GCGGUCG-GUCCcGCccgGGGCg -3'
miRNA:   3'- -GGUGGcuUGCCGGCgCAGGuUG---CUCG- -5'
13295 5' -56.6 NC_003409.1 + 87602 0.66 0.89225
Target:  5'- cCCGCUuGGGCGuGCgGCGgaaUCCAACuggGGGCa -3'
miRNA:   3'- -GGUGG-CUUGC-CGgCGC---AGGUUG---CUCG- -5'
13295 5' -56.6 NC_003409.1 + 95226 0.66 0.89225
Target:  5'- gCCACCGcAACGGCgGUGUaucaGGCGccGCc -3'
miRNA:   3'- -GGUGGC-UUGCCGgCGCAgg--UUGCu-CG- -5'
13295 5' -56.6 NC_003409.1 + 8102 0.66 0.885573
Target:  5'- -gACCuGACGGUCGacuGUCCAACGcGGUu -3'
miRNA:   3'- ggUGGcUUGCCGGCg--CAGGUUGC-UCG- -5'
13295 5' -56.6 NC_003409.1 + 131356 0.66 0.885573
Target:  5'- aCGCgCucAUGGCCGCGUUgCAgaacACGGGCu -3'
miRNA:   3'- gGUG-GcuUGCCGGCGCAG-GU----UGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 127386 0.66 0.885573
Target:  5'- gCCACCaGAUGGCaCGCGccgCCAGCa--- -3'
miRNA:   3'- -GGUGGcUUGCCG-GCGCa--GGUUGcucg -5'
13295 5' -56.6 NC_003409.1 + 67620 0.66 0.885573
Target:  5'- uCCGCCguGAGCGuGaUCGUGUCUccguCGAGCa -3'
miRNA:   3'- -GGUGG--CUUGC-C-GGCGCAGGuu--GCUCG- -5'
13295 5' -56.6 NC_003409.1 + 41768 0.66 0.885573
Target:  5'- --uCCGGuACGcGCCGaaaGaCCGGCGAGCa -3'
miRNA:   3'- gguGGCU-UGC-CGGCg--CaGGUUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 49674 0.66 0.87868
Target:  5'- gCCAgCCaGACGGUgGUGUCCAACa--- -3'
miRNA:   3'- -GGU-GGcUUGCCGgCGCAGGUUGcucg -5'
13295 5' -56.6 NC_003409.1 + 44063 0.66 0.87868
Target:  5'- gUACUGGAUGcGCCG-GUUCAGUGGGCa -3'
miRNA:   3'- gGUGGCUUGC-CGGCgCAGGUUGCUCG- -5'
13295 5' -56.6 NC_003409.1 + 114240 0.66 0.87868
Target:  5'- -uGCCGAccaaGCGacGCCGUGUCCcaguuUGGGCa -3'
miRNA:   3'- ggUGGCU----UGC--CGGCGCAGGuu---GCUCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.