miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13322 5' -53.3 NC_003409.1 + 109853 0.66 0.960672
Target:  5'- uGACgGCCCaCACCAAgacggcuauGCGCGCgCGc -3'
miRNA:   3'- -CUGaCGGGcGUGGUUauu------UGCGUG-GC- -5'
13322 5' -53.3 NC_003409.1 + 50846 0.66 0.960672
Target:  5'- -uUUGCCUGUACCAGUGu-CGCcaguGCCu -3'
miRNA:   3'- cuGACGGGCGUGGUUAUuuGCG----UGGc -5'
13322 5' -53.3 NC_003409.1 + 38428 0.66 0.960672
Target:  5'- aGCUGCCCGC-CCAA-AGACu--CCGg -3'
miRNA:   3'- cUGACGGGCGuGGUUaUUUGcguGGC- -5'
13322 5' -53.3 NC_003409.1 + 87933 0.66 0.960672
Target:  5'- gGGCgGCgCCGUGcCCGGUAGGCcuGCACCa -3'
miRNA:   3'- -CUGaCG-GGCGU-GGUUAUUUG--CGUGGc -5'
13322 5' -53.3 NC_003409.1 + 105610 0.66 0.960672
Target:  5'- aGCUGCCC-CAUCc--AAAUGCACCc -3'
miRNA:   3'- cUGACGGGcGUGGuuaUUUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 54657 0.66 0.960306
Target:  5'- cACUGUCCcaaaacgGCACgGAU-GGCGCACCc -3'
miRNA:   3'- cUGACGGG-------CGUGgUUAuUUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 123588 0.66 0.960306
Target:  5'- cACUGCCCcccacacacaccaGCACCc---AugGCGCCa -3'
miRNA:   3'- cUGACGGG-------------CGUGGuuauUugCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 85122 0.66 0.956906
Target:  5'- cAUUGuCCCGCaACCAGacUAGcuCGCGCCGc -3'
miRNA:   3'- cUGAC-GGGCG-UGGUU--AUUu-GCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 128153 0.66 0.956906
Target:  5'- aGCUcCCCGguCCcGUAAACGuCGCCa -3'
miRNA:   3'- cUGAcGGGCguGGuUAUUUGC-GUGGc -5'
13322 5' -53.3 NC_003409.1 + 113723 0.66 0.956906
Target:  5'- ---gGCCCGC-CCAAUAuacCGCugUGa -3'
miRNA:   3'- cugaCGGGCGuGGUUAUuu-GCGugGC- -5'
13322 5' -53.3 NC_003409.1 + 80771 0.66 0.956906
Target:  5'- aACUGCuuGC-CCAGaaacuCGCACCu -3'
miRNA:   3'- cUGACGggCGuGGUUauuu-GCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 26101 0.66 0.948655
Target:  5'- uACUGCCa-UACCGAcGGcCGCGCCGg -3'
miRNA:   3'- cUGACGGgcGUGGUUaUUuGCGUGGC- -5'
13322 5' -53.3 NC_003409.1 + 51984 0.66 0.948655
Target:  5'- uGAgUGCCgGguCCGgcGUAGcACGCGCCa -3'
miRNA:   3'- -CUgACGGgCguGGU--UAUU-UGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 132961 0.66 0.944161
Target:  5'- ---cGCCgCGCGCCuGUGcGCGUGCCa -3'
miRNA:   3'- cugaCGG-GCGUGGuUAUuUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 45749 0.66 0.944161
Target:  5'- gGGC-GCCauuaGCGCCAugGUGAGCauGCACCa -3'
miRNA:   3'- -CUGaCGGg---CGUGGU--UAUUUG--CGUGGc -5'
13322 5' -53.3 NC_003409.1 + 18143 0.67 0.939418
Target:  5'- aACUGgCCagGgGCCAGUGAGCGCcucCCGg -3'
miRNA:   3'- cUGACgGG--CgUGGUUAUUUGCGu--GGC- -5'
13322 5' -53.3 NC_003409.1 + 29203 0.67 0.939418
Target:  5'- cACUGUUCugauaCACCAGUGGGCGCugCu -3'
miRNA:   3'- cUGACGGGc----GUGGUUAUUUGCGugGc -5'
13322 5' -53.3 NC_003409.1 + 75673 0.67 0.934423
Target:  5'- aGCaGCCagCGuCGCCAAcGGACGCGCCa -3'
miRNA:   3'- cUGaCGG--GC-GUGGUUaUUUGCGUGGc -5'
13322 5' -53.3 NC_003409.1 + 128088 0.67 0.934423
Target:  5'- uGCUGCCCucaccuGCGCCAuc--ACGCcCCGu -3'
miRNA:   3'- cUGACGGG------CGUGGUuauuUGCGuGGC- -5'
13322 5' -53.3 NC_003409.1 + 74053 0.67 0.934423
Target:  5'- ---gGCgaGCGCCGGgagGAACGCGCUGg -3'
miRNA:   3'- cugaCGggCGUGGUUa--UUUGCGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.