miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13345 3' -57 NC_003409.1 + 108694 0.65 0.843908
Target:  5'- gGGaCAGGAgGCCAUGGCGGCcauuaagcgguuuaGGGAcucGCCc -3'
miRNA:   3'- gUC-GUCCU-CGGUGUUGUCG--------------UCCU---CGG- -5'
13345 3' -57 NC_003409.1 + 33025 0.66 0.838139
Target:  5'- gCAGUAGcccGCCGCAaggaGCAGCcugcagGGGAGCa -3'
miRNA:   3'- -GUCGUCcu-CGGUGU----UGUCG------UCCUCGg -5'
13345 3' -57 NC_003409.1 + 46761 0.66 0.838139
Target:  5'- uGGCGGGGGCCc---CAGCA--AGCCu -3'
miRNA:   3'- gUCGUCCUCGGuguuGUCGUccUCGG- -5'
13345 3' -57 NC_003409.1 + 16259 0.66 0.838139
Target:  5'- uCAGCgugAGGuG-CugAGCAGCGGGuuugAGCCg -3'
miRNA:   3'- -GUCG---UCCuCgGugUUGUCGUCC----UCGG- -5'
13345 3' -57 NC_003409.1 + 33170 0.66 0.838139
Target:  5'- -cGCgAGGA-CCAC--CGGCAGGcAGCCa -3'
miRNA:   3'- guCG-UCCUcGGUGuuGUCGUCC-UCGG- -5'
13345 3' -57 NC_003409.1 + 128260 0.66 0.836473
Target:  5'- uCAGCAcGGGGCgugauggCGCAggugaggGCAGCA-GAGCCc -3'
miRNA:   3'- -GUCGU-CCUCG-------GUGU-------UGUCGUcCUCGG- -5'
13345 3' -57 NC_003409.1 + 124645 0.66 0.829734
Target:  5'- gAGCAGGAGUUAgAGgAGguGGAagaGCa -3'
miRNA:   3'- gUCGUCCUCGGUgUUgUCguCCU---CGg -5'
13345 3' -57 NC_003409.1 + 101142 0.66 0.821145
Target:  5'- aGGCcuGAGUgGgGGaGGCGGGAGCCu -3'
miRNA:   3'- gUCGucCUCGgUgUUgUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 113957 0.66 0.821145
Target:  5'- uGGCGGauucGGCCGCAcaGGguGGuGCCg -3'
miRNA:   3'- gUCGUCc---UCGGUGUugUCguCCuCGG- -5'
13345 3' -57 NC_003409.1 + 37457 0.66 0.812379
Target:  5'- uCGGCGGaGGuCCACAACucuGuCAGG-GCCg -3'
miRNA:   3'- -GUCGUCcUC-GGUGUUGu--C-GUCCuCGG- -5'
13345 3' -57 NC_003409.1 + 40523 0.66 0.812379
Target:  5'- cCGGCGGuGGCgGCcAUGGUGGGAGUCu -3'
miRNA:   3'- -GUCGUCcUCGgUGuUGUCGUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 45172 0.66 0.812379
Target:  5'- gCAGUAacGGCCACAuguGCGGUauGGGGGUCg -3'
miRNA:   3'- -GUCGUccUCGGUGU---UGUCG--UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 48165 0.66 0.812379
Target:  5'- gGGCAGGGcaCCACGAUgaAGCuuucGAGCCa -3'
miRNA:   3'- gUCGUCCUc-GGUGUUG--UCGuc--CUCGG- -5'
13345 3' -57 NC_003409.1 + 34924 0.66 0.811493
Target:  5'- uCAGCAGGgcgugauAGuCCACGccuCGGUacccggAGGGGCCg -3'
miRNA:   3'- -GUCGUCC-------UC-GGUGUu--GUCG------UCCUCGG- -5'
13345 3' -57 NC_003409.1 + 77529 0.66 0.803445
Target:  5'- cCAGCAGuGAccuaguaucgagGCCACAAauaaAGCcAGG-GCCa -3'
miRNA:   3'- -GUCGUC-CU------------CGGUGUUg---UCG-UCCuCGG- -5'
13345 3' -57 NC_003409.1 + 132962 0.66 0.803445
Target:  5'- -cGCGGGAuCCGCAgGCAGguGGGuGCg -3'
miRNA:   3'- guCGUCCUcGGUGU-UGUCguCCU-CGg -5'
13345 3' -57 NC_003409.1 + 67803 0.66 0.803445
Target:  5'- gCGGUGGGuGCgGCGcGCAGgGGGcGCCa -3'
miRNA:   3'- -GUCGUCCuCGgUGU-UGUCgUCCuCGG- -5'
13345 3' -57 NC_003409.1 + 83245 0.67 0.798007
Target:  5'- aGGCAugcaGAGUCGCAgaaguauuucugcgcGCGGaCAGGAGCUg -3'
miRNA:   3'- gUCGUc---CUCGGUGU---------------UGUC-GUCCUCGG- -5'
13345 3' -57 NC_003409.1 + 109112 0.67 0.794352
Target:  5'- -uGuCAGGAGCCACu---GUcccGGAGCCg -3'
miRNA:   3'- guC-GUCCUCGGUGuuguCGu--CCUCGG- -5'
13345 3' -57 NC_003409.1 + 107412 0.67 0.794352
Target:  5'- gCGGUGGGAGCCuguuGCAGgAGGguGGCg -3'
miRNA:   3'- -GUCGUCCUCGGugu-UGUCgUCC--UCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.