miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13345 5' -60.4 NC_003409.1 + 62116 0.66 0.695932
Target:  5'- -aAGCCGCAGaGGUuggGGGAGUUUCUGUg -3'
miRNA:   3'- ccUCGGUGUCgUCG---UCCUCGGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 11007 0.66 0.695932
Target:  5'- aGGGCaccuccUAGCGGC-GGAGCCCCa-- -3'
miRNA:   3'- cCUCGgu----GUCGUCGuCCUCGGGGacg -5'
13345 5' -60.4 NC_003409.1 + 18972 0.66 0.685971
Target:  5'- cGGGGCCAUuuuGGUcGCcuGGAgcuGCCCCcGCg -3'
miRNA:   3'- -CCUCGGUG---UCGuCGu-CCU---CGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 115158 0.66 0.685971
Target:  5'- cGA-CCAUGGCGGCAGcGGCagaCCUGUg -3'
miRNA:   3'- cCUcGGUGUCGUCGUCcUCGg--GGACG- -5'
13345 5' -60.4 NC_003409.1 + 107420 0.66 0.675967
Target:  5'- -uAGCCuucGCGGUGGGAGCCUgUUGCa -3'
miRNA:   3'- ccUCGGuguCGUCGUCCUCGGG-GACG- -5'
13345 5' -60.4 NC_003409.1 + 125175 0.66 0.675967
Target:  5'- aGGAGCagcaggaugaGCAGCAGCAGGAugaGCagCaGCa -3'
miRNA:   3'- -CCUCGg---------UGUCGUCGUCCU---CGggGaCG- -5'
13345 5' -60.4 NC_003409.1 + 125129 0.66 0.675967
Target:  5'- uGAGCaGCAGCAGCAGGAugaGCagCaGCa -3'
miRNA:   3'- cCUCGgUGUCGUCGUCCU---CGggGaCG- -5'
13345 5' -60.4 NC_003409.1 + 125093 0.66 0.675967
Target:  5'- uGAGCaGCAGCAGCAGGAugaGCagCaGCa -3'
miRNA:   3'- cCUCGgUGUCGUCGUCCU---CGggGaCG- -5'
13345 5' -60.4 NC_003409.1 + 91747 0.66 0.675967
Target:  5'- --uGCCAaGGCaAGgGGGuGuCCCCUGCa -3'
miRNA:   3'- ccuCGGUgUCG-UCgUCCuC-GGGGACG- -5'
13345 5' -60.4 NC_003409.1 + 24581 0.66 0.674964
Target:  5'- aGGAGCCcCGGCGcGCcacccuccccggaGGGGGaUCCCgGCg -3'
miRNA:   3'- -CCUCGGuGUCGU-CG-------------UCCUC-GGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 109108 0.66 0.665928
Target:  5'- aGGAGCCACuGUccc-GGAGCCggCUGCg -3'
miRNA:   3'- -CCUCGGUGuCGucguCCUCGGg-GACG- -5'
13345 5' -60.4 NC_003409.1 + 19150 0.66 0.665928
Target:  5'- aGGGGcCCGCgggGGCAGCuccAGGcgaccaaaauGGCCCC-GCg -3'
miRNA:   3'- -CCUC-GGUG---UCGUCG---UCC----------UCGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 73038 0.66 0.665928
Target:  5'- cGGGCUGCucucugAGCAGUccAGG-GCCCuCUGCc -3'
miRNA:   3'- cCUCGGUG------UCGUCG--UCCuCGGG-GACG- -5'
13345 5' -60.4 NC_003409.1 + 116242 0.66 0.655862
Target:  5'- aGGAGCUgucCGGCGGCcgcGGAuGCCCUgaGCu -3'
miRNA:   3'- -CCUCGGu--GUCGUCGu--CCU-CGGGGa-CG- -5'
13345 5' -60.4 NC_003409.1 + 61045 0.66 0.655862
Target:  5'- uGGGGCaC-CAGCAGagaaAGGAcccgCCCUGCg -3'
miRNA:   3'- -CCUCG-GuGUCGUCg---UCCUcg--GGGACG- -5'
13345 5' -60.4 NC_003409.1 + 18940 0.66 0.645778
Target:  5'- cGGGGCCAUcuuGGUcGCcuGGAcuGCCCCcGCg -3'
miRNA:   3'- -CCUCGGUG---UCGuCGu-CCU--CGGGGaCG- -5'
13345 5' -60.4 NC_003409.1 + 90286 0.67 0.635683
Target:  5'- -cAGCCGaGGCGGCGauuGAGCCCuCUGUu -3'
miRNA:   3'- ccUCGGUgUCGUCGUc--CUCGGG-GACG- -5'
13345 5' -60.4 NC_003409.1 + 19288 0.67 0.635683
Target:  5'- --cGUCGCAGCGGCaAGGccagcGGCCCCcaaUGUc -3'
miRNA:   3'- ccuCGGUGUCGUCG-UCC-----UCGGGG---ACG- -5'
13345 5' -60.4 NC_003409.1 + 123132 0.67 0.635683
Target:  5'- -uGGCCACuaacaGGCAGGcGCuCCCUGUc -3'
miRNA:   3'- ccUCGGUGucg--UCGUCCuCG-GGGACG- -5'
13345 5' -60.4 NC_003409.1 + 125766 0.67 0.615493
Target:  5'- --uGCUGuugUGGCuccuGCAGGGGCUCCUGCu -3'
miRNA:   3'- ccuCGGU---GUCGu---CGUCCUCGGGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.