Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13358 | 5' | -57.4 | NC_003409.1 | + | 111905 | 0.66 | 0.865303 |
Target: 5'- aAC-CGUCUCCGCCAgggACGCcgauaggGCGgCCa -3' miRNA: 3'- -UGuGCGGAGGUGGU---UGCGca-----CGCaGG- -5' |
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13358 | 5' | -57.4 | NC_003409.1 | + | 89129 | 0.66 | 0.865303 |
Target: 5'- uCGCGcCCUCCAUCG-CGCcUGCGaauuuUCCc -3' miRNA: 3'- uGUGC-GGAGGUGGUuGCGcACGC-----AGG- -5' |
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13358 | 5' | -57.4 | NC_003409.1 | + | 45914 | 0.66 | 0.865303 |
Target: 5'- uGCAUGCU--CACCAugGCGcuaaugGCGcCCg -3' miRNA: 3'- -UGUGCGGagGUGGUugCGCa-----CGCaGG- -5' |
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13358 | 5' | -57.4 | NC_003409.1 | + | 42836 | 0.66 | 0.857758 |
Target: 5'- -aGCGCCUCC-CUGACGaCGa--GUCCg -3' miRNA: 3'- ugUGCGGAGGuGGUUGC-GCacgCAGG- -5' |
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13358 | 5' | -57.4 | NC_003409.1 | + | 42937 | 0.66 | 0.857758 |
Target: 5'- gAC-CGCCcUCGCCGcCGCuUGCGUCa -3' miRNA: 3'- -UGuGCGGaGGUGGUuGCGcACGCAGg -5' |
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13358 | 5' | -57.4 | NC_003409.1 | + | 46933 | 0.66 | 0.842073 |
Target: 5'- uACugGCCcaugUgUACUGGgGCGUGUGUCUg -3' miRNA: 3'- -UGugCGG----AgGUGGUUgCGCACGCAGG- -5' |
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13358 | 5' | -57.4 | NC_003409.1 | + | 13700 | 0.66 | 0.842073 |
Target: 5'- uAUugGCCUCCGCaggaGACcCGcuagGCGuUCCg -3' miRNA: 3'- -UGugCGGAGGUGg---UUGcGCa---CGC-AGG- -5' |
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13358 | 5' | -57.4 | NC_003409.1 | + | 96656 | 0.66 | 0.842073 |
Target: 5'- uGCACGCCaaC-CCucaGUGUGCuGUCCa -3' miRNA: 3'- -UGUGCGGagGuGGuugCGCACG-CAGG- -5' |
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13358 | 5' | -57.4 | NC_003409.1 | + | 43284 | 0.66 | 0.837219 |
Target: 5'- gGCACG-CUCCACCcgucuuuauuuuaaaGACGCuggGCGaUCCc -3' miRNA: 3'- -UGUGCgGAGGUGG---------------UUGCGca-CGC-AGG- -5' |
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13358 | 5' | -57.4 | NC_003409.1 | + | 37964 | 0.66 | 0.833947 |
Target: 5'- gGCGCGCCUgCGCagcucaaGAgGCG-GCG-CCg -3' miRNA: 3'- -UGUGCGGAgGUGg------UUgCGCaCGCaGG- -5' |
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13358 | 5' | -57.4 | NC_003409.1 | + | 39541 | 0.66 | 0.833947 |
Target: 5'- cCGCGuCCUCCAcCCGACGUuUGaGUCUu -3' miRNA: 3'- uGUGC-GGAGGU-GGUUGCGcACgCAGG- -5' |
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13358 | 5' | -57.4 | NC_003409.1 | + | 40700 | 0.66 | 0.833947 |
Target: 5'- cACugGCg-CCACCGAa-CGgccGCGUCCa -3' miRNA: 3'- -UGugCGgaGGUGGUUgcGCa--CGCAGG- -5' |
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13358 | 5' | -57.4 | NC_003409.1 | + | 40569 | 0.66 | 0.82564 |
Target: 5'- gGCGCGCCUgUcgacagGCgAGCGCGUGUuucacGUCUu -3' miRNA: 3'- -UGUGCGGAgG------UGgUUGCGCACG-----CAGG- -5' |
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13358 | 5' | -57.4 | NC_003409.1 | + | 109727 | 0.66 | 0.82564 |
Target: 5'- gACGCGCUUCUGgCGugGCGaagugGCGcaugUCCg -3' miRNA: 3'- -UGUGCGGAGGUgGUugCGCa----CGC----AGG- -5' |
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13358 | 5' | -57.4 | NC_003409.1 | + | 95519 | 0.67 | 0.817161 |
Target: 5'- -aGCGCCUCUugUGAgGCcucuuuGUGCuGUCCu -3' miRNA: 3'- ugUGCGGAGGugGUUgCG------CACG-CAGG- -5' |
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13358 | 5' | -57.4 | NC_003409.1 | + | 9602 | 0.67 | 0.808516 |
Target: 5'- -uGgGCCUCCgagagcaagACCAcgGC-CGUGUGUCCg -3' miRNA: 3'- ugUgCGGAGG---------UGGU--UGcGCACGCAGG- -5' |
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13358 | 5' | -57.4 | NC_003409.1 | + | 83314 | 0.67 | 0.799715 |
Target: 5'- uACAUGCCUCUACUAA-GCG-GUuUCCc -3' miRNA: 3'- -UGUGCGGAGGUGGUUgCGCaCGcAGG- -5' |
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13358 | 5' | -57.4 | NC_003409.1 | + | 16986 | 0.67 | 0.799715 |
Target: 5'- -gGCGUUUCCA---AUGUGUGUGUCCg -3' miRNA: 3'- ugUGCGGAGGUgguUGCGCACGCAGG- -5' |
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13358 | 5' | -57.4 | NC_003409.1 | + | 109619 | 0.67 | 0.790765 |
Target: 5'- gACAUGCgugcgCCGCCucCGCGUGCGa-- -3' miRNA: 3'- -UGUGCGga---GGUGGuuGCGCACGCagg -5' |
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13358 | 5' | -57.4 | NC_003409.1 | + | 87235 | 0.67 | 0.769661 |
Target: 5'- -aGCGCCUCCAcuagaccacggaauCCAAagcgGUGUGCGaacuUCCg -3' miRNA: 3'- ugUGCGGAGGU--------------GGUUg---CGCACGC----AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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