miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13365 5' -60.3 NC_003409.1 + 110007 0.66 0.733937
Target:  5'- gGCGCCACcGccucccgccGCGGCGucuUGgGCGGCGg -3'
miRNA:   3'- -UGCGGUGuC---------CGCCGUu--GCgCGCUGCg -5'
13365 5' -60.3 NC_003409.1 + 24365 0.66 0.733937
Target:  5'- gUGCCGCcGcGCGcGCAGUGCGCGAgGg -3'
miRNA:   3'- uGCGGUGuC-CGC-CGUUGCGCGCUgCg -5'
13365 5' -60.3 NC_003409.1 + 101598 0.66 0.733937
Target:  5'- uCGUCGgAGGUgGGUGGCGCGcCGGUGCg -3'
miRNA:   3'- uGCGGUgUCCG-CCGUUGCGC-GCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 134186 0.66 0.733937
Target:  5'- gUGCCACGGGgGaGCGA-GCGUGuuGUa -3'
miRNA:   3'- uGCGGUGUCCgC-CGUUgCGCGCugCG- -5'
13365 5' -60.3 NC_003409.1 + 27954 0.66 0.733937
Target:  5'- cACGCCGCuAGGUGGgAcCGUG-GGCGa -3'
miRNA:   3'- -UGCGGUG-UCCGCCgUuGCGCgCUGCg -5'
13365 5' -60.3 NC_003409.1 + 55878 0.66 0.728184
Target:  5'- gACGCCGuCgcgaccucaaagaagAGGUGGCcgUGCGCcuaGAUGCg -3'
miRNA:   3'- -UGCGGU-G---------------UCCGCCGuuGCGCG---CUGCG- -5'
13365 5' -60.3 NC_003409.1 + 52159 0.66 0.724333
Target:  5'- -aGUCGCAcggggGGUGGCcuGugGCGUGuGCGCg -3'
miRNA:   3'- ugCGGUGU-----CCGCCG--UugCGCGC-UGCG- -5'
13365 5' -60.3 NC_003409.1 + 108122 0.66 0.714654
Target:  5'- cGCGCCGCagAGGCccagagaaaaGCAuCGCGCGaggaaacccaGCGCa -3'
miRNA:   3'- -UGCGGUG--UCCGc---------CGUuGCGCGC----------UGCG- -5'
13365 5' -60.3 NC_003409.1 + 100868 0.66 0.714654
Target:  5'- aGCGCCACAGacucacaaaGUGGCcg-GUGUGugGUa -3'
miRNA:   3'- -UGCGGUGUC---------CGCCGuugCGCGCugCG- -5'
13365 5' -60.3 NC_003409.1 + 118512 0.66 0.708814
Target:  5'- gGCGCgGCgcaccccaggaacccGGcGCGGCGcACcccaggaacccgGCGCGGCGCa -3'
miRNA:   3'- -UGCGgUG---------------UC-CGCCGU-UG------------CGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 127291 0.66 0.704908
Target:  5'- uGCGCCugAGGuCGG-GACGgaGCaccGGCGCg -3'
miRNA:   3'- -UGCGGugUCC-GCCgUUGCg-CG---CUGCG- -5'
13365 5' -60.3 NC_003409.1 + 18265 0.66 0.704908
Target:  5'- uCGCCAaaaagugagcacCAGGgGGCGggguuucuaACGUGCGACu- -3'
miRNA:   3'- uGCGGU------------GUCCgCCGU---------UGCGCGCUGcg -5'
13365 5' -60.3 NC_003409.1 + 67796 0.66 0.704908
Target:  5'- gACGaUCGCGGuGgGuGCGGCGCGCagggGGCGCc -3'
miRNA:   3'- -UGC-GGUGUC-CgC-CGUUGCGCG----CUGCG- -5'
13365 5' -60.3 NC_003409.1 + 120210 0.66 0.704908
Target:  5'- gACGUC-CAGGCGGCuggcacACGgGCcgugaGCGCc -3'
miRNA:   3'- -UGCGGuGUCCGCCGu-----UGCgCGc----UGCG- -5'
13365 5' -60.3 NC_003409.1 + 102555 0.66 0.704908
Target:  5'- gGCGCCGuac-CGGCAaaccugGCGCGCGACa- -3'
miRNA:   3'- -UGCGGUguccGCCGU------UGCGCGCUGcg -5'
13365 5' -60.3 NC_003409.1 + 86784 0.66 0.704908
Target:  5'- -gGCCACGGauaGGCGGCGCcCGAgGUc -3'
miRNA:   3'- ugCGGUGUCcg-CCGUUGCGcGCUgCG- -5'
13365 5' -60.3 NC_003409.1 + 118580 0.66 0.699031
Target:  5'- gGCGCgGCgcaccccaggaacccGGcGCGGCGcACccaggaacccgGCGCGGCGCa -3'
miRNA:   3'- -UGCGgUG---------------UC-CGCCGU-UG-----------CGCGCUGCG- -5'
13365 5' -60.3 NC_003409.1 + 23221 0.66 0.685248
Target:  5'- cACGCCGCuAGGUGGgAcCGUgaGCGACu- -3'
miRNA:   3'- -UGCGGUG-UCCGCCgUuGCG--CGCUGcg -5'
13365 5' -60.3 NC_003409.1 + 119788 0.66 0.685248
Target:  5'- cACGCCGCuAGGUGGgAcCGUgaGCGACu- -3'
miRNA:   3'- -UGCGGUG-UCCGCCgUuGCG--CGCUGcg -5'
13365 5' -60.3 NC_003409.1 + 52408 0.66 0.68426
Target:  5'- gUGCgACAGGCGGCcucuAGCGUGUccacaaaGuCGCa -3'
miRNA:   3'- uGCGgUGUCCGCCG----UUGCGCG-------CuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.