miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13428 3' -50 NC_003409.1 + 102005 0.66 0.997085
Target:  5'- aCACCCGGUagau-GGCGAgGGCGCGUUc -3'
miRNA:   3'- -GUGGGUUAguguuCUGCU-UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 51033 0.66 0.997085
Target:  5'- gACgCAuAUCACGGGAUGcuAGCGUGUCu -3'
miRNA:   3'- gUGgGU-UAGUGUUCUGCu-UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 2346 0.66 0.997085
Target:  5'- aCACCCAAUUAUAAuACu-AACGCaCCg -3'
miRNA:   3'- -GUGGGUUAGUGUUcUGcuUUGCGcGG- -5'
13428 3' -50 NC_003409.1 + 81544 0.66 0.996776
Target:  5'- gGCCCGgggagugauggagcaGuUCGCGAaGCGuaaAGGCGCGCCg -3'
miRNA:   3'- gUGGGU---------------U-AGUGUUcUGC---UUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 23395 0.66 0.996555
Target:  5'- -uCCCGuUCGagcuAGGCGAc-CGCGCCa -3'
miRNA:   3'- guGGGUuAGUgu--UCUGCUuuGCGCGG- -5'
13428 3' -50 NC_003409.1 + 87720 0.66 0.996555
Target:  5'- gCACUUucucCGgGAGACcAGACGCGCCc -3'
miRNA:   3'- -GUGGGuua-GUgUUCUGcUUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 18888 0.66 0.996555
Target:  5'- uGCCCAGUCGgGcGAUGggGCuuauaGUGUCu -3'
miRNA:   3'- gUGGGUUAGUgUuCUGCuuUG-----CGCGG- -5'
13428 3' -50 NC_003409.1 + 119614 0.66 0.996555
Target:  5'- -uCCCGuUCGagcuAGGCGAc-CGCGCCa -3'
miRNA:   3'- guGGGUuAGUgu--UCUGCUuuGCGCGG- -5'
13428 3' -50 NC_003409.1 + 88075 0.66 0.996555
Target:  5'- cCGCCCAAgcCGCAGcACGAAACacgGCuuGCCg -3'
miRNA:   3'- -GUGGGUUa-GUGUUcUGCUUUG---CG--CGG- -5'
13428 3' -50 NC_003409.1 + 45394 0.66 0.996498
Target:  5'- uCACCCAggccgcucgcgugAUCACAAaGCGGGACcCgGCCc -3'
miRNA:   3'- -GUGGGU-------------UAGUGUUcUGCUUUGcG-CGG- -5'
13428 3' -50 NC_003409.1 + 101610 0.66 0.996498
Target:  5'- uUAUUCAgggugucGUCGgAGGugGGuGGCGCGCCg -3'
miRNA:   3'- -GUGGGU-------UAGUgUUCugCU-UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 90831 0.66 0.995948
Target:  5'- --gCCGGUCACGcAGACG-GGCGCGg- -3'
miRNA:   3'- gugGGUUAGUGU-UCUGCuUUGCGCgg -5'
13428 3' -50 NC_003409.1 + 33998 0.66 0.995948
Target:  5'- -cCCCAca-ACAAGgguACG-GGCGCGCCa -3'
miRNA:   3'- guGGGUuagUGUUC---UGCuUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 75674 0.66 0.995948
Target:  5'- gCAgCCAgcGUCGCca-ACG-GACGCGCCa -3'
miRNA:   3'- -GUgGGU--UAGUGuucUGCuUUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 37017 0.66 0.995948
Target:  5'- aGCUCGAUCAC--GACGGGAUGaUGUCu -3'
miRNA:   3'- gUGGGUUAGUGuuCUGCUUUGC-GCGG- -5'
13428 3' -50 NC_003409.1 + 7520 0.66 0.995883
Target:  5'- uCACCUGGccucgcuguuuacUCACGAGGCuGAcaugcauaaaaGGCGCGUCg -3'
miRNA:   3'- -GUGGGUU-------------AGUGUUCUG-CU-----------UUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 45890 0.66 0.995883
Target:  5'- gCGCCCGGgguggccUgACAAGACGcgGCauaCGCCg -3'
miRNA:   3'- -GUGGGUU-------AgUGUUCUGCuuUGc--GCGG- -5'
13428 3' -50 NC_003409.1 + 41119 0.66 0.995257
Target:  5'- gCGCCCAuucUCAC-GGACcAGcACGCGCg -3'
miRNA:   3'- -GUGGGUu--AGUGuUCUGcUU-UGCGCGg -5'
13428 3' -50 NC_003409.1 + 107985 0.66 0.995257
Target:  5'- gUACUCuGUgGCAGGGagcuccaGggGCGUGCCc -3'
miRNA:   3'- -GUGGGuUAgUGUUCUg------CuuUGCGCGG- -5'
13428 3' -50 NC_003409.1 + 35883 0.66 0.995257
Target:  5'- aCACCCuggggcUCugGaAGGCGAAGCGauCCa -3'
miRNA:   3'- -GUGGGuu----AGugU-UCUGCUUUGCgcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.