miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13444 5' -56.3 NC_003409.1 + 110309 0.66 0.91056
Target:  5'- cGCACGGGucuccCAGUGgCACCguccuucguggugcgGCGGCCa -3'
miRNA:   3'- cCGUGCCCu----GUCGCaGUGG---------------UGUUGGg -5'
13444 5' -56.3 NC_003409.1 + 56363 0.66 0.908154
Target:  5'- cGGagauaGGGACGauuauGCcaaaggCGCCACGACCCa -3'
miRNA:   3'- -CCgug--CCCUGU-----CGca----GUGGUGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 50229 0.66 0.907546
Target:  5'- gGGCGaGGGAgCAGCGUCgucaaauGCUACGcuuuACCg -3'
miRNA:   3'- -CCGUgCCCU-GUCGCAG-------UGGUGU----UGGg -5'
13444 5' -56.3 NC_003409.1 + 91954 0.66 0.901976
Target:  5'- cGGCccagaaACaGGGAC-GCG-UACCGgGACCCu -3'
miRNA:   3'- -CCG------UG-CCCUGuCGCaGUGGUgUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 113565 0.66 0.901976
Target:  5'- -aCACGcGGugGGcCGUCAgCugGGCCUc -3'
miRNA:   3'- ccGUGC-CCugUC-GCAGUgGugUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 61312 0.66 0.901976
Target:  5'- uGCAC-GGAUAGUGaCACUAUGGCCa -3'
miRNA:   3'- cCGUGcCCUGUCGCaGUGGUGUUGGg -5'
13444 5' -56.3 NC_003409.1 + 70542 0.66 0.901976
Target:  5'- gGGCGCGG--CAGCugacucaaaaagGUCACUGCcucuGCCCa -3'
miRNA:   3'- -CCGUGCCcuGUCG------------CAGUGGUGu---UGGG- -5'
13444 5' -56.3 NC_003409.1 + 40796 0.66 0.901976
Target:  5'- aGGCcCcGGGCGGCGgcUCGCCuaauGCAAgCCa -3'
miRNA:   3'- -CCGuGcCCUGUCGC--AGUGG----UGUUgGG- -5'
13444 5' -56.3 NC_003409.1 + 34440 0.66 0.895569
Target:  5'- uGGCcuGCGGGGgGGaUGUCACUAagggaGGCUCa -3'
miRNA:   3'- -CCG--UGCCCUgUC-GCAGUGGUg----UUGGG- -5'
13444 5' -56.3 NC_003409.1 + 131258 0.66 0.895569
Target:  5'- cGGCGCGGGGaGGUGgggCACgaaaacaggCGCAGCUg -3'
miRNA:   3'- -CCGUGCCCUgUCGCa--GUG---------GUGUUGGg -5'
13444 5' -56.3 NC_003409.1 + 28636 0.66 0.895569
Target:  5'- aGCACuGGGACuGCccaGUCACCuuGGCUg -3'
miRNA:   3'- cCGUG-CCCUGuCG---CAGUGGugUUGGg -5'
13444 5' -56.3 NC_003409.1 + 75370 0.66 0.895569
Target:  5'- aGGCACGGGGCGaccuGCGccCugUuuGGCCUu -3'
miRNA:   3'- -CCGUGCCCUGU----CGCa-GugGugUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 105021 0.66 0.895569
Target:  5'- uGGCugGuGGcCAccGCGUCcuucauuuccGCCACGuCCCg -3'
miRNA:   3'- -CCGugC-CCuGU--CGCAG----------UGGUGUuGGG- -5'
13444 5' -56.3 NC_003409.1 + 18879 0.66 0.888935
Target:  5'- gGGCgAUGGGGCuuauAGUGUCuccuGCCAUaauaaggcugGACCCu -3'
miRNA:   3'- -CCG-UGCCCUG----UCGCAG----UGGUG----------UUGGG- -5'
13444 5' -56.3 NC_003409.1 + 113288 0.66 0.882077
Target:  5'- uGGCAUGGGc---CGUUGCCGCGucguCCCc -3'
miRNA:   3'- -CCGUGCCCugucGCAGUGGUGUu---GGG- -5'
13444 5' -56.3 NC_003409.1 + 57455 0.66 0.882077
Target:  5'- aGCuuGCGaGGACAGCcuguugGUCAuCCACuguuAACCCa -3'
miRNA:   3'- cCG--UGC-CCUGUCG------CAGU-GGUG----UUGGG- -5'
13444 5' -56.3 NC_003409.1 + 128331 0.66 0.882077
Target:  5'- uGGC-CGGca-GGUGUCAUgCACAGCCUg -3'
miRNA:   3'- -CCGuGCCcugUCGCAGUG-GUGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 74026 0.66 0.881379
Target:  5'- cGGCAgaGGGACuacuguuGGCaacugCACCACcggGGCCCg -3'
miRNA:   3'- -CCGUg-CCCUG-------UCGca---GUGGUG---UUGGG- -5'
13444 5' -56.3 NC_003409.1 + 52521 0.66 0.879977
Target:  5'- cGGCAC-GGACGGUGacugguuagagauuUUAaaACAGCCCg -3'
miRNA:   3'- -CCGUGcCCUGUCGC--------------AGUggUGUUGGG- -5'
13444 5' -56.3 NC_003409.1 + 128244 0.66 0.875
Target:  5'- uGGCGCaGGugAGgG-CAgCAgAGCCCc -3'
miRNA:   3'- -CCGUGcCCugUCgCaGUgGUgUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.