miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13462 3' -59 NC_003409.1 + 81384 0.66 0.772453
Target:  5'- aACUGCUCCaUCACucccCGgGCCacAGCGCCg -3'
miRNA:   3'- gUGACGGGG-GGUGu---GUgUGG--UCGUGG- -5'
13462 3' -59 NC_003409.1 + 87883 0.66 0.763108
Target:  5'- cCGgaGaCCCCUgACACAgUACCGGCaaGCCg -3'
miRNA:   3'- -GUgaC-GGGGGgUGUGU-GUGGUCG--UGG- -5'
13462 3' -59 NC_003409.1 + 22464 0.66 0.763108
Target:  5'- aGCaGCCCCaaaugugCGCGCaACACCcAGCACa -3'
miRNA:   3'- gUGaCGGGGg------GUGUG-UGUGG-UCGUGg -5'
13462 3' -59 NC_003409.1 + 24248 0.66 0.759337
Target:  5'- aGCUGCCCauguaggcguuagCCACccauguucugggGCGCGCCAGCGgUg -3'
miRNA:   3'- gUGACGGGg------------GGUG------------UGUGUGGUCGUgG- -5'
13462 3' -59 NC_003409.1 + 102461 0.66 0.753649
Target:  5'- ---gGCCCCCauaaACACuUugCAGCGCg -3'
miRNA:   3'- gugaCGGGGGg---UGUGuGugGUCGUGg -5'
13462 3' -59 NC_003409.1 + 131660 0.66 0.753649
Target:  5'- aGCUGCaguCCCCUGCA-GCcgGCCAGgGCCa -3'
miRNA:   3'- gUGACG---GGGGGUGUgUG--UGGUCgUGG- -5'
13462 3' -59 NC_003409.1 + 42444 0.66 0.753649
Target:  5'- uCGCUGUaucUUCCCGCGCuacuaACguGCACCa -3'
miRNA:   3'- -GUGACG---GGGGGUGUGug---UGguCGUGG- -5'
13462 3' -59 NC_003409.1 + 99919 0.66 0.744084
Target:  5'- aGCcGCCCCgCCaugGCAUugGCCcGCACg -3'
miRNA:   3'- gUGaCGGGG-GG---UGUGugUGGuCGUGg -5'
13462 3' -59 NC_003409.1 + 131368 0.66 0.744084
Target:  5'- gCAgUGCCCCgUACGCGCucaugGCCGcGUugCa -3'
miRNA:   3'- -GUgACGGGGgGUGUGUG-----UGGU-CGugG- -5'
13462 3' -59 NC_003409.1 + 43714 0.66 0.744084
Target:  5'- aCGCUGUCCgUCGucucCGgACGCCGGcCACCu -3'
miRNA:   3'- -GUGACGGGgGGU----GUgUGUGGUC-GUGG- -5'
13462 3' -59 NC_003409.1 + 21354 0.66 0.744084
Target:  5'- gUugUGCCUUCCG-ACAC-CCcGCGCCg -3'
miRNA:   3'- -GugACGGGGGGUgUGUGuGGuCGUGG- -5'
13462 3' -59 NC_003409.1 + 104634 0.66 0.744084
Target:  5'- -uCUGUauCCCCCGCGCcuagugagGCACCAuuGCGCa -3'
miRNA:   3'- guGACG--GGGGGUGUG--------UGUGGU--CGUGg -5'
13462 3' -59 NC_003409.1 + 127943 0.66 0.744084
Target:  5'- uCugUGCUCCCCcguGgACgACGCCgAGUGCCu -3'
miRNA:   3'- -GugACGGGGGG---UgUG-UGUGG-UCGUGG- -5'
13462 3' -59 NC_003409.1 + 111171 0.66 0.738299
Target:  5'- aCACaagcCCCCCCGCAgaaaagcgggcCGCACCcgucauucgaguaauGGCGCCc -3'
miRNA:   3'- -GUGac--GGGGGGUGU-----------GUGUGG---------------UCGUGG- -5'
13462 3' -59 NC_003409.1 + 81939 0.66 0.734424
Target:  5'- uCACUuCCCCCCACAUuccCcCCGuGCACa -3'
miRNA:   3'- -GUGAcGGGGGGUGUGu--GuGGU-CGUGg -5'
13462 3' -59 NC_003409.1 + 115954 0.66 0.734424
Target:  5'- gGCUGUaCCCCACAgGaaauuCACaAGCACCu -3'
miRNA:   3'- gUGACGgGGGGUGUgU-----GUGgUCGUGG- -5'
13462 3' -59 NC_003409.1 + 133014 0.66 0.734424
Target:  5'- aACaGCUCCaggccgguCCGCG-GCGCCAGCGCCu -3'
miRNA:   3'- gUGaCGGGG--------GGUGUgUGUGGUCGUGG- -5'
13462 3' -59 NC_003409.1 + 97714 0.66 0.734424
Target:  5'- --aUGUUUCCCACGUGCACCAGCucagcgauGCCg -3'
miRNA:   3'- gugACGGGGGGUGUGUGUGGUCG--------UGG- -5'
13462 3' -59 NC_003409.1 + 50724 0.66 0.724676
Target:  5'- cCACUgGCUCaCCCAUACG-AUCGGCACa -3'
miRNA:   3'- -GUGA-CGGG-GGGUGUGUgUGGUCGUGg -5'
13462 3' -59 NC_003409.1 + 47477 0.66 0.723697
Target:  5'- aGCUGCUgcagaauagcgugCCCCAguUGCugCGGCACg -3'
miRNA:   3'- gUGACGG-------------GGGGUguGUGugGUCGUGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.