Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13462 | 3' | -59 | NC_003409.1 | + | 81384 | 0.66 | 0.772453 |
Target: 5'- aACUGCUCCaUCACucccCGgGCCacAGCGCCg -3' miRNA: 3'- gUGACGGGG-GGUGu---GUgUGG--UCGUGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 87883 | 0.66 | 0.763108 |
Target: 5'- cCGgaGaCCCCUgACACAgUACCGGCaaGCCg -3' miRNA: 3'- -GUgaC-GGGGGgUGUGU-GUGGUCG--UGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 22464 | 0.66 | 0.763108 |
Target: 5'- aGCaGCCCCaaaugugCGCGCaACACCcAGCACa -3' miRNA: 3'- gUGaCGGGGg------GUGUG-UGUGG-UCGUGg -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 24248 | 0.66 | 0.759337 |
Target: 5'- aGCUGCCCauguaggcguuagCCACccauguucugggGCGCGCCAGCGgUg -3' miRNA: 3'- gUGACGGGg------------GGUG------------UGUGUGGUCGUgG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 102461 | 0.66 | 0.753649 |
Target: 5'- ---gGCCCCCauaaACACuUugCAGCGCg -3' miRNA: 3'- gugaCGGGGGg---UGUGuGugGUCGUGg -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 131660 | 0.66 | 0.753649 |
Target: 5'- aGCUGCaguCCCCUGCA-GCcgGCCAGgGCCa -3' miRNA: 3'- gUGACG---GGGGGUGUgUG--UGGUCgUGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 42444 | 0.66 | 0.753649 |
Target: 5'- uCGCUGUaucUUCCCGCGCuacuaACguGCACCa -3' miRNA: 3'- -GUGACG---GGGGGUGUGug---UGguCGUGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 99919 | 0.66 | 0.744084 |
Target: 5'- aGCcGCCCCgCCaugGCAUugGCCcGCACg -3' miRNA: 3'- gUGaCGGGG-GG---UGUGugUGGuCGUGg -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 131368 | 0.66 | 0.744084 |
Target: 5'- gCAgUGCCCCgUACGCGCucaugGCCGcGUugCa -3' miRNA: 3'- -GUgACGGGGgGUGUGUG-----UGGU-CGugG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 43714 | 0.66 | 0.744084 |
Target: 5'- aCGCUGUCCgUCGucucCGgACGCCGGcCACCu -3' miRNA: 3'- -GUGACGGGgGGU----GUgUGUGGUC-GUGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 21354 | 0.66 | 0.744084 |
Target: 5'- gUugUGCCUUCCG-ACAC-CCcGCGCCg -3' miRNA: 3'- -GugACGGGGGGUgUGUGuGGuCGUGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 104634 | 0.66 | 0.744084 |
Target: 5'- -uCUGUauCCCCCGCGCcuagugagGCACCAuuGCGCa -3' miRNA: 3'- guGACG--GGGGGUGUG--------UGUGGU--CGUGg -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 127943 | 0.66 | 0.744084 |
Target: 5'- uCugUGCUCCCCcguGgACgACGCCgAGUGCCu -3' miRNA: 3'- -GugACGGGGGG---UgUG-UGUGG-UCGUGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 111171 | 0.66 | 0.738299 |
Target: 5'- aCACaagcCCCCCCGCAgaaaagcgggcCGCACCcgucauucgaguaauGGCGCCc -3' miRNA: 3'- -GUGac--GGGGGGUGU-----------GUGUGG---------------UCGUGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 81939 | 0.66 | 0.734424 |
Target: 5'- uCACUuCCCCCCACAUuccCcCCGuGCACa -3' miRNA: 3'- -GUGAcGGGGGGUGUGu--GuGGU-CGUGg -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 115954 | 0.66 | 0.734424 |
Target: 5'- gGCUGUaCCCCACAgGaaauuCACaAGCACCu -3' miRNA: 3'- gUGACGgGGGGUGUgU-----GUGgUCGUGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 133014 | 0.66 | 0.734424 |
Target: 5'- aACaGCUCCaggccgguCCGCG-GCGCCAGCGCCu -3' miRNA: 3'- gUGaCGGGG--------GGUGUgUGUGGUCGUGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 97714 | 0.66 | 0.734424 |
Target: 5'- --aUGUUUCCCACGUGCACCAGCucagcgauGCCg -3' miRNA: 3'- gugACGGGGGGUGUGUGUGGUCG--------UGG- -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 50724 | 0.66 | 0.724676 |
Target: 5'- cCACUgGCUCaCCCAUACG-AUCGGCACa -3' miRNA: 3'- -GUGA-CGGG-GGGUGUGUgUGGUCGUGg -5' |
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13462 | 3' | -59 | NC_003409.1 | + | 47477 | 0.66 | 0.723697 |
Target: 5'- aGCUGCUgcagaauagcgugCCCCAguUGCugCGGCACg -3' miRNA: 3'- gUGACGG-------------GGGGUguGUGugGUCGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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