miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13463 5' -59.3 NC_003409.1 + 46609 0.66 0.732915
Target:  5'- cGUCGCCgagggAGCcacGCUGcGAAGCCCACg-- -3'
miRNA:   3'- -CGGUGG-----UCGu--CGAC-CUUCGGGUGgag -5'
13463 5' -59.3 NC_003409.1 + 68506 0.66 0.732915
Target:  5'- gGCCGCgCGGCuauGCUGGA--CCCACg-- -3'
miRNA:   3'- -CGGUG-GUCGu--CGACCUucGGGUGgag -5'
13463 5' -59.3 NC_003409.1 + 37181 0.66 0.731934
Target:  5'- uCCGCCAcGCAGCucaucaaUGGGAGaaCCaACCUCu -3'
miRNA:   3'- cGGUGGU-CGUCG-------ACCUUCg-GG-UGGAG- -5'
13463 5' -59.3 NC_003409.1 + 110900 0.66 0.723072
Target:  5'- cCCGCC-GCGGUcauugacccacGGAAGCCCGUCUCg -3'
miRNA:   3'- cGGUGGuCGUCGa----------CCUUCGGGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 87434 0.66 0.723072
Target:  5'- cGCuCACUcGCAGCacccUGaGGAGCCCgGCCUUc -3'
miRNA:   3'- -CG-GUGGuCGUCG----AC-CUUCGGG-UGGAG- -5'
13463 5' -59.3 NC_003409.1 + 117502 0.66 0.717128
Target:  5'- cGCCAUuuGCGugcaaaaugugcuuuGCUGGAGGCCaACUUCc -3'
miRNA:   3'- -CGGUGguCGU---------------CGACCUUCGGgUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 88341 0.66 0.713151
Target:  5'- cGCCAUCGG-GGCUGaGggGUCgC-CCUCg -3'
miRNA:   3'- -CGGUGGUCgUCGAC-CuuCGG-GuGGAG- -5'
13463 5' -59.3 NC_003409.1 + 133703 0.66 0.703161
Target:  5'- cGCCAgCGGUAGCaGGucuGCCC-CCa- -3'
miRNA:   3'- -CGGUgGUCGUCGaCCuu-CGGGuGGag -5'
13463 5' -59.3 NC_003409.1 + 109720 0.66 0.703161
Target:  5'- uGCCuagauCCugagguaauaaGGCAGCUGu-GGUCCACCUUg -3'
miRNA:   3'- -CGGu----GG-----------UCGUCGACcuUCGGGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 117698 0.66 0.693111
Target:  5'- cGCaucaACCAGC-GCgacGGAAGUUgGCCUCc -3'
miRNA:   3'- -CGg---UGGUCGuCGa--CCUUCGGgUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 53723 0.66 0.68301
Target:  5'- cGCaCAUCAGCgAGCUGGA--CCguCCUCc -3'
miRNA:   3'- -CG-GUGGUCG-UCGACCUucGGguGGAG- -5'
13463 5' -59.3 NC_003409.1 + 70579 0.66 0.68301
Target:  5'- cCCAUgGGCGGgUGGGugacAGUCCGCCa- -3'
miRNA:   3'- cGGUGgUCGUCgACCU----UCGGGUGGag -5'
13463 5' -59.3 NC_003409.1 + 35443 0.66 0.678958
Target:  5'- gGCUuCCAGCAGCacgcaaaagagcaGGuaaccGGGCCCACCUg -3'
miRNA:   3'- -CGGuGGUCGUCGa------------CC-----UUCGGGUGGAg -5'
13463 5' -59.3 NC_003409.1 + 61099 0.67 0.672868
Target:  5'- uGCaUACCuuuGCGGUaugGGucGCCUACCUCu -3'
miRNA:   3'- -CG-GUGGu--CGUCGa--CCuuCGGGUGGAG- -5'
13463 5' -59.3 NC_003409.1 + 88834 0.67 0.672868
Target:  5'- uGCCuGCCGGCAGCgauau-CCCGCCUg -3'
miRNA:   3'- -CGG-UGGUCGUCGaccuucGGGUGGAg -5'
13463 5' -59.3 NC_003409.1 + 35281 0.67 0.662692
Target:  5'- uGCUcuuuuGCguGCuGCUGGAAGCCUGCUc- -3'
miRNA:   3'- -CGG-----UGguCGuCGACCUUCGGGUGGag -5'
13463 5' -59.3 NC_003409.1 + 10387 0.67 0.662692
Target:  5'- uUCACCGGcCAGCUGGgcGCgCGCa-- -3'
miRNA:   3'- cGGUGGUC-GUCGACCuuCGgGUGgag -5'
13463 5' -59.3 NC_003409.1 + 26505 0.67 0.652492
Target:  5'- cGCCuguACCGGagAGCUGGAugucGUCCACC-Cg -3'
miRNA:   3'- -CGG---UGGUCg-UCGACCUu---CGGGUGGaG- -5'
13463 5' -59.3 NC_003409.1 + 125942 0.67 0.642275
Target:  5'- aGCCA-CAGCAGCaGGAGcCCCugCa- -3'
miRNA:   3'- -CGGUgGUCGUCGaCCUUcGGGugGag -5'
13463 5' -59.3 NC_003409.1 + 131108 0.67 0.642275
Target:  5'- gGCUuCCAGCuGCUGGuGGCCCuggguguaguggGCCg- -3'
miRNA:   3'- -CGGuGGUCGuCGACCuUCGGG------------UGGag -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.