Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13463 | 5' | -59.3 | NC_003409.1 | + | 46609 | 0.66 | 0.732915 |
Target: 5'- cGUCGCCgagggAGCcacGCUGcGAAGCCCACg-- -3' miRNA: 3'- -CGGUGG-----UCGu--CGAC-CUUCGGGUGgag -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 68506 | 0.66 | 0.732915 |
Target: 5'- gGCCGCgCGGCuauGCUGGA--CCCACg-- -3' miRNA: 3'- -CGGUG-GUCGu--CGACCUucGGGUGgag -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 37181 | 0.66 | 0.731934 |
Target: 5'- uCCGCCAcGCAGCucaucaaUGGGAGaaCCaACCUCu -3' miRNA: 3'- cGGUGGU-CGUCG-------ACCUUCg-GG-UGGAG- -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 110900 | 0.66 | 0.723072 |
Target: 5'- cCCGCC-GCGGUcauugacccacGGAAGCCCGUCUCg -3' miRNA: 3'- cGGUGGuCGUCGa----------CCUUCGGGUGGAG- -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 87434 | 0.66 | 0.723072 |
Target: 5'- cGCuCACUcGCAGCacccUGaGGAGCCCgGCCUUc -3' miRNA: 3'- -CG-GUGGuCGUCG----AC-CUUCGGG-UGGAG- -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 117502 | 0.66 | 0.717128 |
Target: 5'- cGCCAUuuGCGugcaaaaugugcuuuGCUGGAGGCCaACUUCc -3' miRNA: 3'- -CGGUGguCGU---------------CGACCUUCGGgUGGAG- -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 88341 | 0.66 | 0.713151 |
Target: 5'- cGCCAUCGG-GGCUGaGggGUCgC-CCUCg -3' miRNA: 3'- -CGGUGGUCgUCGAC-CuuCGG-GuGGAG- -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 133703 | 0.66 | 0.703161 |
Target: 5'- cGCCAgCGGUAGCaGGucuGCCC-CCa- -3' miRNA: 3'- -CGGUgGUCGUCGaCCuu-CGGGuGGag -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 109720 | 0.66 | 0.703161 |
Target: 5'- uGCCuagauCCugagguaauaaGGCAGCUGu-GGUCCACCUUg -3' miRNA: 3'- -CGGu----GG-----------UCGUCGACcuUCGGGUGGAG- -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 117698 | 0.66 | 0.693111 |
Target: 5'- cGCaucaACCAGC-GCgacGGAAGUUgGCCUCc -3' miRNA: 3'- -CGg---UGGUCGuCGa--CCUUCGGgUGGAG- -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 53723 | 0.66 | 0.68301 |
Target: 5'- cGCaCAUCAGCgAGCUGGA--CCguCCUCc -3' miRNA: 3'- -CG-GUGGUCG-UCGACCUucGGguGGAG- -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 70579 | 0.66 | 0.68301 |
Target: 5'- cCCAUgGGCGGgUGGGugacAGUCCGCCa- -3' miRNA: 3'- cGGUGgUCGUCgACCU----UCGGGUGGag -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 35443 | 0.66 | 0.678958 |
Target: 5'- gGCUuCCAGCAGCacgcaaaagagcaGGuaaccGGGCCCACCUg -3' miRNA: 3'- -CGGuGGUCGUCGa------------CC-----UUCGGGUGGAg -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 61099 | 0.67 | 0.672868 |
Target: 5'- uGCaUACCuuuGCGGUaugGGucGCCUACCUCu -3' miRNA: 3'- -CG-GUGGu--CGUCGa--CCuuCGGGUGGAG- -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 88834 | 0.67 | 0.672868 |
Target: 5'- uGCCuGCCGGCAGCgauau-CCCGCCUg -3' miRNA: 3'- -CGG-UGGUCGUCGaccuucGGGUGGAg -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 35281 | 0.67 | 0.662692 |
Target: 5'- uGCUcuuuuGCguGCuGCUGGAAGCCUGCUc- -3' miRNA: 3'- -CGG-----UGguCGuCGACCUUCGGGUGGag -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 10387 | 0.67 | 0.662692 |
Target: 5'- uUCACCGGcCAGCUGGgcGCgCGCa-- -3' miRNA: 3'- cGGUGGUC-GUCGACCuuCGgGUGgag -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 26505 | 0.67 | 0.652492 |
Target: 5'- cGCCuguACCGGagAGCUGGAugucGUCCACC-Cg -3' miRNA: 3'- -CGG---UGGUCg-UCGACCUu---CGGGUGGaG- -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 125942 | 0.67 | 0.642275 |
Target: 5'- aGCCA-CAGCAGCaGGAGcCCCugCa- -3' miRNA: 3'- -CGGUgGUCGUCGaCCUUcGGGugGag -5' |
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13463 | 5' | -59.3 | NC_003409.1 | + | 131108 | 0.67 | 0.642275 |
Target: 5'- gGCUuCCAGCuGCUGGuGGCCCuggguguaguggGCCg- -3' miRNA: 3'- -CGGuGGUCGuCGACCuUCGGG------------UGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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