miRNA display CGI


Results 1 - 20 of 260 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 3' -59.2 NC_003521.1 + 240142 0.68 0.775397
Target:  5'- gGGCGCGgaaaGCGCUGgCUCAU-GGCgucGGCc -3'
miRNA:   3'- -CUGCGU----UGCGACgGAGUGgCCGa--CCG- -5'
13934 3' -59.2 NC_003521.1 + 240058 0.68 0.766419
Target:  5'- cACGCcGCGCaGCCagaUgGCCGGCgucggGGCc -3'
miRNA:   3'- cUGCGuUGCGaCGG---AgUGGCCGa----CCG- -5'
13934 3' -59.2 NC_003521.1 + 239764 0.72 0.543731
Target:  5'- cGACGUGGCGCgGCUguaucgguccaACCGGCUGGg -3'
miRNA:   3'- -CUGCGUUGCGaCGGag---------UGGCCGACCg -5'
13934 3' -59.2 NC_003521.1 + 239644 0.66 0.85002
Target:  5'- -cCGCGA-GCUGCgC-CGCCGG-UGGCa -3'
miRNA:   3'- cuGCGUUgCGACG-GaGUGGCCgACCG- -5'
13934 3' -59.2 NC_003521.1 + 239473 0.69 0.710546
Target:  5'- -cCGCGGCGCguucaGCCccaGCCGGUUGGa -3'
miRNA:   3'- cuGCGUUGCGa----CGGag-UGGCCGACCg -5'
13934 3' -59.2 NC_003521.1 + 239443 0.68 0.784257
Target:  5'- gGGCGUcgUGCUGCC-CAgUcGCUGGCu -3'
miRNA:   3'- -CUGCGuuGCGACGGaGUgGcCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 239367 0.66 0.864785
Target:  5'- gGAUGCccgugUGCUGCC--ACCGGC-GGCg -3'
miRNA:   3'- -CUGCGuu---GCGACGGagUGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 239014 0.71 0.613361
Target:  5'- aGACGuCGugGCUGCaUUCGCCGGacccccggacCUGGUc -3'
miRNA:   3'- -CUGC-GUugCGACG-GAGUGGCC----------GACCG- -5'
13934 3' -59.2 NC_003521.1 + 238487 0.66 0.878785
Target:  5'- cGACGCucGACGCcgUGCCgaCGCCcaGGCUcuuGGCc -3'
miRNA:   3'- -CUGCG--UUGCG--ACGGa-GUGG--CCGA---CCG- -5'
13934 3' -59.2 NC_003521.1 + 238452 0.75 0.363199
Target:  5'- aGGCGCAGgGCgGCCUCgGCgGGCggGGCg -3'
miRNA:   3'- -CUGCGUUgCGaCGGAG-UGgCCGa-CCG- -5'
13934 3' -59.2 NC_003521.1 + 235772 0.66 0.864785
Target:  5'- gGGgGCGGCG-UGCCcCGCCGGCcgcgacuccGGCg -3'
miRNA:   3'- -CUgCGUUGCgACGGaGUGGCCGa--------CCG- -5'
13934 3' -59.2 NC_003521.1 + 235426 0.67 0.826533
Target:  5'- uGACGCGACGCcaaucGCgCUCGgaguCCGuGgUGGCg -3'
miRNA:   3'- -CUGCGUUGCGa----CG-GAGU----GGC-CgACCG- -5'
13934 3' -59.2 NC_003521.1 + 234942 0.67 0.826533
Target:  5'- cACGUAcUGCaGCCaaugCGCCGGCUccGGCu -3'
miRNA:   3'- cUGCGUuGCGaCGGa---GUGGCCGA--CCG- -5'
13934 3' -59.2 NC_003521.1 + 234725 0.69 0.709591
Target:  5'- -cCGCGACucgcacgaccguuGgUGCCUCugcaaCGGCUGGCg -3'
miRNA:   3'- cuGCGUUG-------------CgACGGAGug---GCCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 234349 0.66 0.864785
Target:  5'- uGACGCAGC-CaGCgCUCGCCGaGUcccagGGCg -3'
miRNA:   3'- -CUGCGUUGcGaCG-GAGUGGC-CGa----CCG- -5'
13934 3' -59.2 NC_003521.1 + 233738 0.66 0.878786
Target:  5'- gGACGCcgccgccGCGuCUGCuucuuCUCACCGGg-GGCa -3'
miRNA:   3'- -CUGCGu------UGC-GACG-----GAGUGGCCgaCCG- -5'
13934 3' -59.2 NC_003521.1 + 232770 0.66 0.871884
Target:  5'- uACGgucuGCGCUGcCCUCAgCaGCUGGUu -3'
miRNA:   3'- cUGCgu--UGCGAC-GGAGUgGcCGACCG- -5'
13934 3' -59.2 NC_003521.1 + 232675 0.66 0.864785
Target:  5'- aGGCGCuGGCGUUGCCgUGCC-GCaGGCg -3'
miRNA:   3'- -CUGCG-UUGCGACGGaGUGGcCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 227595 0.67 0.810058
Target:  5'- uGAgGCAugGCagGCUugggCGCCGGUcGGCc -3'
miRNA:   3'- -CUgCGUugCGa-CGGa---GUGGCCGaCCG- -5'
13934 3' -59.2 NC_003521.1 + 227213 0.68 0.737932
Target:  5'- --gGCGGCGCcGCCauggauuUCGCCGGggGGCc -3'
miRNA:   3'- cugCGUUGCGaCGG-------AGUGGCCgaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.