miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13934 5' -59.7 NC_003521.1 + 116584 0.65 0.833499
Target:  5'- cUGGUCUCGCgCGGCccucccuGCAagucGCUGCGGc -3'
miRNA:   3'- -ACCGGAGCG-GUCG-------UGUgu--CGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 28983 0.65 0.832694
Target:  5'- cGGCgUgCGCCaccaucuGGCGCACGGUcggacucUGCAGg -3'
miRNA:   3'- aCCGgA-GCGG-------UCGUGUGUCG-------ACGUCa -5'
13934 5' -59.7 NC_003521.1 + 153628 0.65 0.832694
Target:  5'- gGGCUgUGCCGGCACcagaagaucugcCAGCUGCuGa -3'
miRNA:   3'- aCCGGaGCGGUCGUGu-----------GUCGACGuCa -5'
13934 5' -59.7 NC_003521.1 + 145893 0.66 0.8262
Target:  5'- aGGCC--GCCGGCGgcgggaGCAGCgGCGGUu -3'
miRNA:   3'- aCCGGagCGGUCGUg-----UGUCGaCGUCA- -5'
13934 5' -59.7 NC_003521.1 + 224594 0.66 0.8262
Target:  5'- cGGCgaCGCUacgAGCACG-GGCUGCGGc -3'
miRNA:   3'- aCCGgaGCGG---UCGUGUgUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 87888 0.66 0.8262
Target:  5'- aGGCCUgCGgCGGCAC-CuGCUGCc-- -3'
miRNA:   3'- aCCGGA-GCgGUCGUGuGuCGACGuca -5'
13934 5' -59.7 NC_003521.1 + 100512 0.66 0.8262
Target:  5'- gGGCgUCGgaCGGUGCACGGUgGCGGg -3'
miRNA:   3'- aCCGgAGCg-GUCGUGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 101834 0.66 0.8262
Target:  5'- aGGCCUCG--GGCACgaugaagaGCGGCaGCAGg -3'
miRNA:   3'- aCCGGAGCggUCGUG--------UGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 129982 0.66 0.8262
Target:  5'- cGGCgUCGaCgGGC-CGCGGCcgGCAGa -3'
miRNA:   3'- aCCGgAGC-GgUCGuGUGUCGa-CGUCa -5'
13934 5' -59.7 NC_003521.1 + 45289 0.66 0.8262
Target:  5'- aGGUCUCGCCcu-GCACGGCcGUGGg -3'
miRNA:   3'- aCCGGAGCGGucgUGUGUCGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 168094 0.66 0.8262
Target:  5'- gGGCCUgGCCgcuccugcucuGGCugACAuGC-GCGGUg -3'
miRNA:   3'- aCCGGAgCGG-----------UCGugUGU-CGaCGUCA- -5'
13934 5' -59.7 NC_003521.1 + 111979 0.66 0.8262
Target:  5'- gUGGCg-UGCCGGCGCACGGaCUGgAcGUc -3'
miRNA:   3'- -ACCGgaGCGGUCGUGUGUC-GACgU-CA- -5'
13934 5' -59.7 NC_003521.1 + 85443 0.66 0.8262
Target:  5'- cGGCCUCGUCGuccGCGC-CGGCgagaaagGUGGUc -3'
miRNA:   3'- aCCGGAGCGGU---CGUGuGUCGa------CGUCA- -5'
13934 5' -59.7 NC_003521.1 + 196726 0.66 0.8262
Target:  5'- gGGCCgagUGCCAGCggagguucGCGCGGCaGCcGg -3'
miRNA:   3'- aCCGGa--GCGGUCG--------UGUGUCGaCGuCa -5'
13934 5' -59.7 NC_003521.1 + 34558 0.66 0.825381
Target:  5'- cGGCCUUGuggucggggugcaCCAgGCugACgccgGGCUGCAGg -3'
miRNA:   3'- aCCGGAGC-------------GGU-CGugUG----UCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 113143 0.66 0.825381
Target:  5'- cGGCUgacgucgUCgGCCAGC-CGCGGgaGCAGc -3'
miRNA:   3'- aCCGG-------AG-CGGUCGuGUGUCgaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 29129 0.66 0.817934
Target:  5'- cUGcGCUgcuacauCCAGCAC-CAGCUGCAGa -3'
miRNA:   3'- -AC-CGGagc----GGUCGUGuGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 25774 0.66 0.817934
Target:  5'- aGGCa--GCCcaggGGCuccACGCGGCUGCAGc -3'
miRNA:   3'- aCCGgagCGG----UCG---UGUGUCGACGUCa -5'
13934 5' -59.7 NC_003521.1 + 33242 0.66 0.817934
Target:  5'- cGGCgUUgaGCUGGCACACGcGCaGCAGg -3'
miRNA:   3'- aCCGgAG--CGGUCGUGUGU-CGaCGUCa -5'
13934 5' -59.7 NC_003521.1 + 18691 0.66 0.817934
Target:  5'- gGGUUUCGCCauggccGGCGCGaucCGGCUGUGGc -3'
miRNA:   3'- aCCGGAGCGG------UCGUGU---GUCGACGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.