miRNA display CGI


Results 41 - 60 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 130401 0.67 0.989067
Target:  5'- -cGGUgGCGGCaGCGGCGGCGccgccGACGa -3'
miRNA:   3'- caCCA-UGCUGcUGCUGUCGCua---CUGC- -5'
13937 5' -52.8 NC_003521.1 + 117388 0.67 0.989067
Target:  5'- gGUGGaagaggagGCGGCGGCugaGCGGCGGaGGCGg -3'
miRNA:   3'- -CACCa-------UGCUGCUGc--UGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 215050 0.67 0.990349
Target:  5'- -cGGUGaaGAgGACGGCGGCGAgcggGAgGg -3'
miRNA:   3'- caCCAUg-CUgCUGCUGUCGCUa---CUgC- -5'
13937 5' -52.8 NC_003521.1 + 193898 0.67 0.990349
Target:  5'- --uGUACGACGugGucagguuuCAGCGcgGGCa -3'
miRNA:   3'- cacCAUGCUGCugCu-------GUCGCuaCUGc -5'
13937 5' -52.8 NC_003521.1 + 93695 0.67 0.990349
Target:  5'- -gGGUGCGA-GAUGGCggaucgcguGGCGGUGAgGa -3'
miRNA:   3'- caCCAUGCUgCUGCUG---------UCGCUACUgC- -5'
13937 5' -52.8 NC_003521.1 + 55927 0.67 0.991511
Target:  5'- gGUGGggccCGACGACGAggUGGCGcaccuguggagcGUGACGc -3'
miRNA:   3'- -CACCau--GCUGCUGCU--GUCGC------------UACUGC- -5'
13937 5' -52.8 NC_003521.1 + 133225 0.67 0.991511
Target:  5'- -gGGUucaGgGGCGAUGGCGGuCGAgGACGa -3'
miRNA:   3'- caCCA---UgCUGCUGCUGUC-GCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 59611 0.67 0.987655
Target:  5'- aGUGGcgGCGGCccCGGCGGCGAccGCGg -3'
miRNA:   3'- -CACCa-UGCUGcuGCUGUCGCUacUGC- -5'
13937 5' -52.8 NC_003521.1 + 76048 0.67 0.992459
Target:  5'- -cGGaGCGGgccgccagacgcuUGAUGACGGCGAUGuGCGg -3'
miRNA:   3'- caCCaUGCU-------------GCUGCUGUCGCUAC-UGC- -5'
13937 5' -52.8 NC_003521.1 + 127368 0.67 0.990349
Target:  5'- cGUGGUGCG-CGGCaGguGCG-UGAUGa -3'
miRNA:   3'- -CACCAUGCuGCUGcUguCGCuACUGC- -5'
13937 5' -52.8 NC_003521.1 + 157949 0.67 0.992559
Target:  5'- cGUGGccugagGCugGGCGACGACGGCGcUGguaGCGa -3'
miRNA:   3'- -CACCa-----UG--CUGCUGCUGUCGCuAC---UGC- -5'
13937 5' -52.8 NC_003521.1 + 164904 0.67 0.992559
Target:  5'- cGUGaugACGACGACGAUgAG-GAUGACc -3'
miRNA:   3'- -CACca-UGCUGCUGCUG-UCgCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 201531 0.67 0.992559
Target:  5'- aUGGUuccGCuACGGCGcCGGCGAcgUGGCGc -3'
miRNA:   3'- cACCA---UGcUGCUGCuGUCGCU--ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 151439 0.67 0.989067
Target:  5'- cGUGcGUACcguGCGGCGACAG--GUGACGa -3'
miRNA:   3'- -CAC-CAUGc--UGCUGCUGUCgcUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 46638 0.67 0.989067
Target:  5'- -cGGUagACGGCGuCGGCGGCGG-GAUc -3'
miRNA:   3'- caCCA--UGCUGCuGCUGUCGCUaCUGc -5'
13937 5' -52.8 NC_003521.1 + 153113 0.67 0.992559
Target:  5'- -gGGcGCGcGCGACGGCAGCa--GGCGg -3'
miRNA:   3'- caCCaUGC-UGCUGCUGUCGcuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 19058 0.67 0.991511
Target:  5'- -aGG-ACGGCGGCG-CGGCGcaGACGc -3'
miRNA:   3'- caCCaUGCUGCUGCuGUCGCuaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 143117 0.67 0.987655
Target:  5'- -aGG-ACGACGAgucggccaccacCGACGGCGAgggagugGGCGu -3'
miRNA:   3'- caCCaUGCUGCU------------GCUGUCGCUa------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 98958 0.67 0.987655
Target:  5'- gGUGGUgGCGgcuaGCGACGGCGGCGccuuuaggaGGCGu -3'
miRNA:   3'- -CACCA-UGC----UGCUGCUGUCGCua-------CUGC- -5'
13937 5' -52.8 NC_003521.1 + 78135 0.67 0.987655
Target:  5'- gGUGGgcgcguuaGCGGCGGCGGCcGCGA--ACGa -3'
miRNA:   3'- -CACCa-------UGCUGCUGCUGuCGCUacUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.