miRNA display CGI


Results 41 - 60 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13937 5' -52.8 NC_003521.1 + 193898 0.67 0.990349
Target:  5'- --uGUACGACGugGucagguuuCAGCGcgGGCa -3'
miRNA:   3'- cacCAUGCUGCugCu-------GUCGCuaCUGc -5'
13937 5' -52.8 NC_003521.1 + 191830 0.66 0.996362
Target:  5'- -gGGUGUGAaaUGACGugGGCGcuUGACGu -3'
miRNA:   3'- caCCAUGCU--GCUGCugUCGCu-ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 191677 0.67 0.987655
Target:  5'- -aGGU-CGcCGAgGACGGCGA-GGCGu -3'
miRNA:   3'- caCCAuGCuGCUgCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 191135 0.67 0.989067
Target:  5'- cUGGcagGCuGACGGCGACAGCGcc-GCGc -3'
miRNA:   3'- cACCa--UG-CUGCUGCUGUCGCuacUGC- -5'
13937 5' -52.8 NC_003521.1 + 191051 0.67 0.992948
Target:  5'- cUGGccgACGcucaguucuguucccGCGGCGACcGUGGUGGCGg -3'
miRNA:   3'- cACCa--UGC---------------UGCUGCUGuCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 190297 0.8 0.516662
Target:  5'- cUGGU-CGAuCGGCGACGGUGAUGGCa -3'
miRNA:   3'- cACCAuGCU-GCUGCUGUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 190260 0.66 0.994346
Target:  5'- gGUGGUgggaGCGGUGACGGCGGCuuuuugagaaGGUGgACGg -3'
miRNA:   3'- -CACCA----UGCUGCUGCUGUCG----------CUAC-UGC- -5'
13937 5' -52.8 NC_003521.1 + 190197 0.68 0.982567
Target:  5'- -cGGcccgcACGAUGAUGAUAaaucGCGGUGGCGg -3'
miRNA:   3'- caCCa----UGCUGCUGCUGU----CGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 186807 0.68 0.982374
Target:  5'- -aGGcGCcACGGCGugGGCGAccagaucUGACGg -3'
miRNA:   3'- caCCaUGcUGCUGCugUCGCU-------ACUGC- -5'
13937 5' -52.8 NC_003521.1 + 181498 0.72 0.904399
Target:  5'- cGUGGccUACGugGucaACGACGGCGAUcGGCc -3'
miRNA:   3'- -CACC--AUGCugC---UGCUGUCGCUA-CUGc -5'
13937 5' -52.8 NC_003521.1 + 180804 0.77 0.655229
Target:  5'- -cGGUACGccGCGGaGACGGUGGUGACGa -3'
miRNA:   3'- caCCAUGC--UGCUgCUGUCGCUACUGC- -5'
13937 5' -52.8 NC_003521.1 + 180381 0.74 0.824371
Target:  5'- cUGG-ACGACGACGACGGCucccaGACGc -3'
miRNA:   3'- cACCaUGCUGCUGCUGUCGcua--CUGC- -5'
13937 5' -52.8 NC_003521.1 + 179094 0.66 0.994955
Target:  5'- -cGGUgacaguaGCGACGACaGCAGCGuaggugcAUGACc -3'
miRNA:   3'- caCCA-------UGCUGCUGcUGUCGC-------UACUGc -5'
13937 5' -52.8 NC_003521.1 + 178346 0.67 0.986106
Target:  5'- -cGGagacAUGACGACGACGGCGGUu--- -3'
miRNA:   3'- caCCa---UGCUGCUGCUGUCGCUAcugc -5'
13937 5' -52.8 NC_003521.1 + 171960 0.69 0.964774
Target:  5'- uGUGG-AUGACGGugggUGGCAGCGG-GGCGg -3'
miRNA:   3'- -CACCaUGCUGCU----GCUGUCGCUaCUGC- -5'
13937 5' -52.8 NC_003521.1 + 171362 0.72 0.891718
Target:  5'- -aGGUACGcgguaACGGCGggcggggagGCGGCGGUGGCa -3'
miRNA:   3'- caCCAUGC-----UGCUGC---------UGUCGCUACUGc -5'
13937 5' -52.8 NC_003521.1 + 170340 0.7 0.957931
Target:  5'- uUGGaagACGugG-CGGCAGCGGUGGu- -3'
miRNA:   3'- cACCa--UGCugCuGCUGUCGCUACUgc -5'
13937 5' -52.8 NC_003521.1 + 169213 0.8 0.488265
Target:  5'- -gGGaGCGACGGCGACAGCGgcGGCc -3'
miRNA:   3'- caCCaUGCUGCUGCUGUCGCuaCUGc -5'
13937 5' -52.8 NC_003521.1 + 168540 0.71 0.932144
Target:  5'- -cGGccaGCG-CGGCGGCGGCGcUGGCGg -3'
miRNA:   3'- caCCa--UGCuGCUGCUGUCGCuACUGC- -5'
13937 5' -52.8 NC_003521.1 + 167875 0.7 0.939814
Target:  5'- aUGGgACGACGACGACcaacgccaccacgAGCGGcaacagcagcggcgUGACGa -3'
miRNA:   3'- cACCaUGCUGCUGCUG-------------UCGCU--------------ACUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.