miRNA display CGI


Results 1 - 20 of 179 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 3' -57.7 NC_003521.1 + 153074 0.66 0.945112
Target:  5'- uCCgCCGCCGGgGCccGggCCGggGcCCa -3'
miRNA:   3'- -GG-GGCGGCCgCGuaCgaGGCaaUaGG- -5'
13940 3' -57.7 NC_003521.1 + 34978 0.66 0.945112
Target:  5'- -aUCGCgGGCGCAgaagGuCUCCGggG-CCa -3'
miRNA:   3'- ggGGCGgCCGCGUa---C-GAGGCaaUaGG- -5'
13940 3' -57.7 NC_003521.1 + 83020 0.66 0.945112
Target:  5'- gCCCGCCGGUcgcGCGUGaUCUc--GUCCc -3'
miRNA:   3'- gGGGCGGCCG---CGUACgAGGcaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 231245 0.66 0.945112
Target:  5'- aCCCGCUGGCGuCAUGauagcaccCUUCGagcUCCc -3'
miRNA:   3'- gGGGCGGCCGC-GUAC--------GAGGCaauAGG- -5'
13940 3' -57.7 NC_003521.1 + 6420 0.66 0.945112
Target:  5'- gCCCCGCCaGGgGUugcUGCUCU----UCCu -3'
miRNA:   3'- -GGGGCGG-CCgCGu--ACGAGGcaauAGG- -5'
13940 3' -57.7 NC_003521.1 + 17107 0.66 0.945112
Target:  5'- gUCCGCCuGCGCcgGCgaggaCGgucgGUCCu -3'
miRNA:   3'- gGGGCGGcCGCGuaCGag---GCaa--UAGG- -5'
13940 3' -57.7 NC_003521.1 + 234927 0.66 0.945112
Target:  5'- aUgCGCCGGCuCcgGCUCCuggcuGUUggGUCCg -3'
miRNA:   3'- gGgGCGGCCGcGuaCGAGG-----CAA--UAGG- -5'
13940 3' -57.7 NC_003521.1 + 122068 0.66 0.945112
Target:  5'- aCCCCaccacgGCCGaGCGCAaguaccgccaccUGC-CCGUgg-CCg -3'
miRNA:   3'- -GGGG------CGGC-CGCGU------------ACGaGGCAauaGG- -5'
13940 3' -57.7 NC_003521.1 + 224082 0.66 0.945112
Target:  5'- cUCCgGCgGGCGCGcGCgCCGgcgGUCg -3'
miRNA:   3'- -GGGgCGgCCGCGUaCGaGGCaa-UAGg -5'
13940 3' -57.7 NC_003521.1 + 218015 0.66 0.945112
Target:  5'- aCCCGCgucugUGGUGUcUGCgUCCGUgg-CCg -3'
miRNA:   3'- gGGGCG-----GCCGCGuACG-AGGCAauaGG- -5'
13940 3' -57.7 NC_003521.1 + 112723 0.66 0.941245
Target:  5'- gCCCCGCCgGGCGCGcccaccagggccgccUGggCCGccugagcgggcgucgGUCCg -3'
miRNA:   3'- -GGGGCGG-CCGCGU---------------ACgaGGCaa-------------UAGG- -5'
13940 3' -57.7 NC_003521.1 + 197736 0.66 0.940805
Target:  5'- gCCCGCC-GCGCGUGaacaUCCG----CCa -3'
miRNA:   3'- gGGGCGGcCGCGUACg---AGGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 77198 0.66 0.940805
Target:  5'- gCCCGCacgaagCGGUGgGUGaugCCGUUcUCCa -3'
miRNA:   3'- gGGGCG------GCCGCgUACga-GGCAAuAGG- -5'
13940 3' -57.7 NC_003521.1 + 94034 0.66 0.940805
Target:  5'- gCUCGCCGGgGCccGC-CUucUGUCCa -3'
miRNA:   3'- gGGGCGGCCgCGuaCGaGGcaAUAGG- -5'
13940 3' -57.7 NC_003521.1 + 163996 0.66 0.940805
Target:  5'- -gCCGCCGGCGCc-GCUC----AUCCc -3'
miRNA:   3'- ggGGCGGCCGCGuaCGAGgcaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 193537 0.66 0.940805
Target:  5'- gCCCGucCCGGCaCccGCUCCGcagccgaccgUAUCCg -3'
miRNA:   3'- gGGGC--GGCCGcGuaCGAGGCa---------AUAGG- -5'
13940 3' -57.7 NC_003521.1 + 118914 0.66 0.940805
Target:  5'- cCCUCGUCGGCGCcgcggcguggGCggCGgcGUCCc -3'
miRNA:   3'- -GGGGCGGCCGCGua--------CGagGCaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 110904 0.66 0.940805
Target:  5'- aCCgUGCCGGCGCccgGCgagaugCCGaUGcCCg -3'
miRNA:   3'- -GGgGCGGCCGCGua-CGa-----GGCaAUaGG- -5'
13940 3' -57.7 NC_003521.1 + 239513 0.66 0.940805
Target:  5'- aCCCGCCGuCGC-UGCUgacggCCGUgcagcgCCa -3'
miRNA:   3'- gGGGCGGCcGCGuACGA-----GGCAaua---GG- -5'
13940 3' -57.7 NC_003521.1 + 201802 0.66 0.940805
Target:  5'- aCCCGCCGuCGC-UGCUgacggCCGUgcagcgCCa -3'
miRNA:   3'- gGGGCGGCcGCGuACGA-----GGCAaua---GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.