miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 3' -57.7 NC_003521.1 + 224080 0.7 0.759265
Target:  5'- gCCCGCgguggcggCGGCGCAgGC-CCGUcGUCUg -3'
miRNA:   3'- gGGGCG--------GCCGCGUaCGaGGCAaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 39278 0.71 0.740991
Target:  5'- cCUUCGgCGGCGCccGCUCCGg---CCu -3'
miRNA:   3'- -GGGGCgGCCGCGuaCGAGGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 67821 0.72 0.654466
Target:  5'- gCCCGCCgccugacacaguuGGCGCAUGauCUCCGa-GUCCc -3'
miRNA:   3'- gGGGCGG-------------CCGCGUAC--GAGGCaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 118531 0.77 0.415343
Target:  5'- aCCgCCGCUGGUGCcgGCUaCCGcgugAUCCa -3'
miRNA:   3'- -GG-GGCGGCCGCGuaCGA-GGCaa--UAGG- -5'
13940 3' -57.7 NC_003521.1 + 207247 0.68 0.843358
Target:  5'- aCCCGCCuGGgGCGUcauucGCUUCGUggaacgCCa -3'
miRNA:   3'- gGGGCGG-CCgCGUA-----CGAGGCAaua---GG- -5'
13940 3' -57.7 NC_003521.1 + 28573 0.7 0.785898
Target:  5'- gCCgCGCCGGggucgcugcCGC-UGCUCuCGUUGUCg -3'
miRNA:   3'- -GGgGCGGCC---------GCGuACGAG-GCAAUAGg -5'
13940 3' -57.7 NC_003521.1 + 55180 0.71 0.700628
Target:  5'- gCCCaCGCCGGCGCugauccugcaaacgGUGCgcagCCacugcgUGUCCa -3'
miRNA:   3'- -GGG-GCGGCCGCG--------------UACGa---GGca----AUAGG- -5'
13940 3' -57.7 NC_003521.1 + 91365 0.77 0.388594
Target:  5'- uCCCCGaCCGGCGCAggcGCagacgggccccuguUgCGUUGUCCg -3'
miRNA:   3'- -GGGGC-GGCCGCGUa--CG--------------AgGCAAUAGG- -5'
13940 3' -57.7 NC_003521.1 + 130254 0.7 0.785898
Target:  5'- gCCgCCGCCGGCGCAgcgGCagCGacgGUgCa -3'
miRNA:   3'- -GG-GGCGGCCGCGUa--CGagGCaa-UAgG- -5'
13940 3' -57.7 NC_003521.1 + 27206 0.79 0.330737
Target:  5'- aCCCGCCgGGCGCGgaGCUCCGcUUGUgCa -3'
miRNA:   3'- gGGGCGG-CCGCGUa-CGAGGC-AAUAgG- -5'
13940 3' -57.7 NC_003521.1 + 204558 0.71 0.71296
Target:  5'- aCCCGCCGGuCGUcgGCaugCCGgucaUGUCg -3'
miRNA:   3'- gGGGCGGCC-GCGuaCGa--GGCa---AUAGg -5'
13940 3' -57.7 NC_003521.1 + 24691 0.7 0.762873
Target:  5'- gCCCGCCGGCcccuGCGccgucuggcuuucuaUGCUCCGcgggCCc -3'
miRNA:   3'- gGGGCGGCCG----CGU---------------ACGAGGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 71181 0.72 0.674755
Target:  5'- aCCCUGCUGGCGCugacgGCUCUGa----- -3'
miRNA:   3'- -GGGGCGGCCGCGua---CGAGGCaauagg -5'
13940 3' -57.7 NC_003521.1 + 153885 0.72 0.665107
Target:  5'- aCCCGCUGGCGCAggaGCUgCUGagcgCCa -3'
miRNA:   3'- gGGGCGGCCGCGUa--CGA-GGCaauaGG- -5'
13940 3' -57.7 NC_003521.1 + 33243 0.73 0.597291
Target:  5'- aUCCGCCaGgGCuccuucugGUUCCGUUGUCCg -3'
miRNA:   3'- gGGGCGGcCgCGua------CGAGGCAAUAGG- -5'
13940 3' -57.7 NC_003521.1 + 71229 0.75 0.521232
Target:  5'- uCUCCGUCGGCGUG-GCUCCGUccggagCCg -3'
miRNA:   3'- -GGGGCGGCCGCGUaCGAGGCAaua---GG- -5'
13940 3' -57.7 NC_003521.1 + 217452 0.68 0.858321
Target:  5'- gCCUGCCugGGCgGCAUGgaCCGUcGUCg -3'
miRNA:   3'- gGGGCGG--CCG-CGUACgaGGCAaUAGg -5'
13940 3' -57.7 NC_003521.1 + 55800 0.68 0.843358
Target:  5'- cCCUCGUCGGCGCGgcgcucgcUGCgcguacCCGUgGUCa -3'
miRNA:   3'- -GGGGCGGCCGCGU--------ACGa-----GGCAaUAGg -5'
13940 3' -57.7 NC_003521.1 + 45801 0.69 0.835615
Target:  5'- gCCgCCGCUgacggGGCGCccGCUCCaa-GUCCa -3'
miRNA:   3'- -GG-GGCGG-----CCGCGuaCGAGGcaaUAGG- -5'
13940 3' -57.7 NC_003521.1 + 149892 0.69 0.811413
Target:  5'- aCCUCGCCGGCGgCGUccaGCgCCGUU-UCg -3'
miRNA:   3'- -GGGGCGGCCGC-GUA---CGaGGCAAuAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.