miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13940 5' -52.8 NC_003521.1 + 118376 0.66 0.995138
Target:  5'- cGGGgcUGGAGGCGguCGUGgUCGUGGGc -3'
miRNA:   3'- -CUCaaGCUUUUGCguGCAC-GGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 74871 0.66 0.995138
Target:  5'- uGGcgCGGcggcgAGGCGCGcCG-GCCGCGGGa -3'
miRNA:   3'- cUCaaGCU-----UUUGCGU-GCaCGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 193027 0.66 0.995138
Target:  5'- gGAGaUCGAGcuGAUGgACG-GCCcGCGGAc -3'
miRNA:   3'- -CUCaAGCUU--UUGCgUGCaCGG-CGCCU- -5'
13940 5' -52.8 NC_003521.1 + 226028 0.66 0.995138
Target:  5'- cGAGcgCGA--GCgGCGCGUGCUGCa-- -3'
miRNA:   3'- -CUCaaGCUuuUG-CGUGCACGGCGccu -5'
13940 5' -52.8 NC_003521.1 + 154083 0.66 0.995138
Target:  5'- aGAGcgUGGAAACGgGCGUGCUG-GGc -3'
miRNA:   3'- -CUCaaGCUUUUGCgUGCACGGCgCCu -5'
13940 5' -52.8 NC_003521.1 + 44467 0.66 0.995138
Target:  5'- ---gUUGAGGAUGCGCGU-CCGCaGGGu -3'
miRNA:   3'- cucaAGCUUUUGCGUGCAcGGCG-CCU- -5'
13940 5' -52.8 NC_003521.1 + 57461 0.66 0.994382
Target:  5'- cGAGUUUGcGAugacucccuGCGCcgcuuCGUGCUGCGGc -3'
miRNA:   3'- -CUCAAGCuUU---------UGCGu----GCACGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 157953 0.66 0.994382
Target:  5'- ---cUCGAAGACgaGCGCGUGCgCGCa-- -3'
miRNA:   3'- cucaAGCUUUUG--CGUGCACG-GCGccu -5'
13940 5' -52.8 NC_003521.1 + 123081 0.66 0.994382
Target:  5'- cGGUagCGGcgGCGUGuCGcUGCCGCGGGa -3'
miRNA:   3'- cUCAa-GCUuuUGCGU-GC-ACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 1554 0.66 0.993533
Target:  5'- cGAGaagagGAGAACGCggaGCGUGgaugcCCGCGGAa -3'
miRNA:   3'- -CUCaag--CUUUUGCG---UGCAC-----GGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 56070 0.66 0.993533
Target:  5'- uGGUUCGA--GCGCACcaucuaUGCCgGCGGc -3'
miRNA:   3'- cUCAAGCUuuUGCGUGc-----ACGG-CGCCu -5'
13940 5' -52.8 NC_003521.1 + 103881 0.66 0.993443
Target:  5'- -uGUUCGAGGGCcaguacaGCAcCGUGCCcaccGUGGAg -3'
miRNA:   3'- cuCAAGCUUUUG-------CGU-GCACGG----CGCCU- -5'
13940 5' -52.8 NC_003521.1 + 45230 0.66 0.992585
Target:  5'- aGGGUUCGggGAuCGCG-GUGUCGCc-- -3'
miRNA:   3'- -CUCAAGCuuUU-GCGUgCACGGCGccu -5'
13940 5' -52.8 NC_003521.1 + 129698 0.66 0.992585
Target:  5'- -cGggCGAGGACGCcCGcuucugccgGCCGCGGc -3'
miRNA:   3'- cuCaaGCUUUUGCGuGCa--------CGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 160761 0.66 0.992585
Target:  5'- uGGUUUuccuuuCGCGCGUGCCGcCGGc -3'
miRNA:   3'- cUCAAGcuuuu-GCGUGCACGGC-GCCu -5'
13940 5' -52.8 NC_003521.1 + 192118 0.66 0.99228
Target:  5'- ---aUCGAcaacaucuuagacgAGGCGCugaggaACGUGCUGCGGGa -3'
miRNA:   3'- cucaAGCU--------------UUUGCG------UGCACGGCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 123984 0.66 0.991965
Target:  5'- cGGGUcgcaggUCGAugugcagcuggaucaGGugGUAgGUGCCGCGGu -3'
miRNA:   3'- -CUCA------AGCU---------------UUugCGUgCACGGCGCCu -5'
13940 5' -52.8 NC_003521.1 + 142463 0.66 0.991529
Target:  5'- gGAGggCGAGAGCG-GCG-GCgGCGGu -3'
miRNA:   3'- -CUCaaGCUUUUGCgUGCaCGgCGCCu -5'
13940 5' -52.8 NC_003521.1 + 222594 0.66 0.991529
Target:  5'- -cGgaUGAAAACGCGCa-GCuCGCGGAa -3'
miRNA:   3'- cuCaaGCUUUUGCGUGcaCG-GCGCCU- -5'
13940 5' -52.8 NC_003521.1 + 235856 0.66 0.991418
Target:  5'- cGAGUccgccucUCGuccuccCGCACGUcCCGCGGGu -3'
miRNA:   3'- -CUCA-------AGCuuuu--GCGUGCAcGGCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.