Results 21 - 40 of 272 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13941 | 5' | -55.7 | NC_003521.1 | + | 122513 | 0.72 | 0.745716 |
Target: 5'- -aGACGCCCAgCGACGU-GGCGgCGCUc -3' miRNA: 3'- gaCUGUGGGU-GCUGCAgUCGUgGUGA- -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 214681 | 0.72 | 0.717099 |
Target: 5'- -cGuCACCCACGcCGUCucuAGCGCCAUUc -3' miRNA: 3'- gaCuGUGGGUGCuGCAG---UCGUGGUGA- -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 59435 | 0.74 | 0.638374 |
Target: 5'- cCUGACuGCCCGCGGCG-CcGUGCCGCa -3' miRNA: 3'- -GACUG-UGGGUGCUGCaGuCGUGGUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 102602 | 0.75 | 0.549556 |
Target: 5'- -cGcCACCC-CGGCGUCGGCGcCCACg -3' miRNA: 3'- gaCuGUGGGuGCUGCAGUCGU-GGUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 218727 | 0.71 | 0.791419 |
Target: 5'- aCUG-CGCCCACGGCGU-GGUGCCGg- -3' miRNA: 3'- -GACuGUGGGUGCUGCAgUCGUGGUga -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 76052 | 0.72 | 0.755078 |
Target: 5'- aUGguGCugCCGCGGCGUCuGCACCu-- -3' miRNA: 3'- gAC--UGugGGUGCUGCAGuCGUGGuga -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 127285 | 0.73 | 0.707412 |
Target: 5'- -gGGCACCgCgGCGGCGUCgucgGGCACCGCc -3' miRNA: 3'- gaCUGUGG-G-UGCUGCAG----UCGUGGUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 214348 | 0.76 | 0.539874 |
Target: 5'- cCUGACGCCCgugAUGugGUCGGCG-CGCUg -3' miRNA: 3'- -GACUGUGGG---UGCugCAGUCGUgGUGA- -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 3704 | 0.72 | 0.755078 |
Target: 5'- cCUG-UGCCCuCGGCGUCGGCAUgGCg -3' miRNA: 3'- -GACuGUGGGuGCUGCAGUCGUGgUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 224050 | 0.77 | 0.483175 |
Target: 5'- uCUGGCgGCCCACGGCGguaaCGGCGCCGa- -3' miRNA: 3'- -GACUG-UGGGUGCUGCa---GUCGUGGUga -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 223659 | 0.73 | 0.707412 |
Target: 5'- -gGGCGCCaCACGgcccGCGUCggGGCGCCGCg -3' miRNA: 3'- gaCUGUGG-GUGC----UGCAG--UCGUGGUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 211838 | 0.72 | 0.745716 |
Target: 5'- -gGACACCgcCGCGAgCGUgCGGCGCUACUg -3' miRNA: 3'- gaCUGUGG--GUGCU-GCA-GUCGUGGUGA- -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 104315 | 0.73 | 0.697664 |
Target: 5'- gCUGGCGCagACGGCGUCggAGCACUGCg -3' miRNA: 3'- -GACUGUGggUGCUGCAG--UCGUGGUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 239773 | 0.73 | 0.658238 |
Target: 5'- -cGGCGCCgGCGACGU-GGCGCgGCUg -3' miRNA: 3'- gaCUGUGGgUGCUGCAgUCGUGgUGA- -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 204097 | 0.74 | 0.618492 |
Target: 5'- -cGACAUCCGCGACGagGGCGUCGCg -3' miRNA: 3'- gaCUGUGGGUGCUGCagUCGUGGUGa -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 91465 | 0.75 | 0.588758 |
Target: 5'- aCUG-UGCCCACGACGcgcccgCGGUACCGCUu -3' miRNA: 3'- -GACuGUGGGUGCUGCa-----GUCGUGGUGA- -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 188407 | 0.71 | 0.799316 |
Target: 5'- -cGGCACCgGCaGCGUCGGCggugccaGCCGCUc -3' miRNA: 3'- gaCUGUGGgUGcUGCAGUCG-------UGGUGA- -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 128375 | 0.71 | 0.791419 |
Target: 5'- -gGAC-CCCAUGAUG-CAGCGCCuGCUg -3' miRNA: 3'- gaCUGuGGGUGCUGCaGUCGUGG-UGA- -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 103547 | 0.71 | 0.782517 |
Target: 5'- -gGugGCCUACGACGagaCGGCGCCGg- -3' miRNA: 3'- gaCugUGGGUGCUGCa--GUCGUGGUga -5' |
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13941 | 5' | -55.7 | NC_003521.1 | + | 146142 | 0.71 | 0.773487 |
Target: 5'- -cGGCGgCCuCGuCGUCGGCGCCGCc -3' miRNA: 3'- gaCUGUgGGuGCuGCAGUCGUGGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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