miRNA display CGI


Results 1 - 20 of 272 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13941 5' -55.7 NC_003521.1 + 10819 1.09 0.005359
Target:  5'- aCUGACACCCACGACGUCAGCACCACUa -3'
miRNA:   3'- -GACUGUGGGUGCUGCAGUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 127285 0.73 0.707412
Target:  5'- -gGGCACCgCgGCGGCGUCgucgGGCACCGCc -3'
miRNA:   3'- gaCUGUGG-G-UGCUGCAG----UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 214681 0.72 0.717099
Target:  5'- -cGuCACCCACGcCGUCucuAGCGCCAUUc -3'
miRNA:   3'- gaCuGUGGGUGCuGCAG---UCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 180265 0.66 0.970587
Target:  5'- -cGACGaggaugCCACGACGgCGGC-CCGCg -3'
miRNA:   3'- gaCUGUg-----GGUGCUGCaGUCGuGGUGa -5'
13941 5' -55.7 NC_003521.1 + 91465 0.75 0.588758
Target:  5'- aCUG-UGCCCACGACGcgcccgCGGUACCGCUu -3'
miRNA:   3'- -GACuGUGGGUGCUGCa-----GUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 26860 0.75 0.588758
Target:  5'- -cGAUugcCCCAaagGACGUCAGCACCAUUg -3'
miRNA:   3'- gaCUGu--GGGUg--CUGCAGUCGUGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 204097 0.74 0.618492
Target:  5'- -cGACAUCCGCGACGagGGCGUCGCg -3'
miRNA:   3'- gaCUGUGGGUGCUGCagUCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 103587 0.74 0.618492
Target:  5'- -cGGCGCUgGCG-CGUCAGCGCCuGCUg -3'
miRNA:   3'- gaCUGUGGgUGCuGCAGUCGUGG-UGA- -5'
13941 5' -55.7 NC_003521.1 + 239773 0.73 0.658238
Target:  5'- -cGGCGCCgGCGACGU-GGCGCgGCUg -3'
miRNA:   3'- gaCUGUGGgUGCUGCAgUCGUGgUGA- -5'
13941 5' -55.7 NC_003521.1 + 74032 0.73 0.697664
Target:  5'- gUGGCGCUCAUGACGcCGGUGCCGg- -3'
miRNA:   3'- gACUGUGGGUGCUGCaGUCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 149930 0.73 0.678022
Target:  5'- -cGGgGCCCACGAUGUCgGGCAgcCCGCa -3'
miRNA:   3'- gaCUgUGGGUGCUGCAG-UCGU--GGUGa -5'
13941 5' -55.7 NC_003521.1 + 59435 0.74 0.638374
Target:  5'- cCUGACuGCCCGCGGCG-CcGUGCCGCa -3'
miRNA:   3'- -GACUG-UGGGUGCUGCaGuCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 224050 0.77 0.483175
Target:  5'- uCUGGCgGCCCACGGCGguaaCGGCGCCGa- -3'
miRNA:   3'- -GACUG-UGGGUGCUGCa---GUCGUGGUga -5'
13941 5' -55.7 NC_003521.1 + 104315 0.73 0.697664
Target:  5'- gCUGGCGCagACGGCGUCggAGCACUGCg -3'
miRNA:   3'- -GACUGUGggUGCUGCAG--UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 214348 0.76 0.539874
Target:  5'- cCUGACGCCCgugAUGugGUCGGCG-CGCUg -3'
miRNA:   3'- -GACUGUGGG---UGCugCAGUCGUgGUGA- -5'
13941 5' -55.7 NC_003521.1 + 123722 0.74 0.628432
Target:  5'- gCUGACGCCCAgccUGACGgugcaggugCGGCACgCGCUg -3'
miRNA:   3'- -GACUGUGGGU---GCUGCa--------GUCGUG-GUGA- -5'
13941 5' -55.7 NC_003521.1 + 77677 0.73 0.697664
Target:  5'- -cGugGCCC-CGuCGUCGGCuGCCGCUg -3'
miRNA:   3'- gaCugUGGGuGCuGCAGUCG-UGGUGA- -5'
13941 5' -55.7 NC_003521.1 + 223659 0.73 0.707412
Target:  5'- -gGGCGCCaCACGgcccGCGUCggGGCGCCGCg -3'
miRNA:   3'- gaCUGUGG-GUGC----UGCAG--UCGUGGUGa -5'
13941 5' -55.7 NC_003521.1 + 102602 0.75 0.549556
Target:  5'- -cGcCACCC-CGGCGUCGGCGcCCACg -3'
miRNA:   3'- gaCuGUGGGuGCUGCAGUCGU-GGUGa -5'
13941 5' -55.7 NC_003521.1 + 103101 0.74 0.608562
Target:  5'- -gGGCGCCCugGcGCGcuucucgCAGCGCCGCUa -3'
miRNA:   3'- gaCUGUGGGugC-UGCa------GUCGUGGUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.