miRNA display CGI


Results 41 - 60 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 5' -54.6 NC_003521.1 + 127294 0.7 0.851283
Target:  5'- cAGCGCGacgggcaccGCGGCGGCGUcGUcggGCACc -3'
miRNA:   3'- -UCGCGC---------CGCCGCCGUAcUAauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 124726 0.73 0.736034
Target:  5'- gAGCGCGGCGGCGaacGCGUGccgc--CGCg -3'
miRNA:   3'- -UCGCGCCGCCGC---CGUACuaauauGUG- -5'
13942 5' -54.6 NC_003521.1 + 133056 0.79 0.389777
Target:  5'- cGGCGUcaGGCGGCGGCggGAUg--ACGCg -3'
miRNA:   3'- -UCGCG--CCGCCGCCGuaCUAauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 167061 0.7 0.843377
Target:  5'- cAGCaGCGGCGGCGGCAUc--------- -3'
miRNA:   3'- -UCG-CGCCGCCGCCGUAcuaauaugug -5'
13942 5' -54.6 NC_003521.1 + 156329 0.9 0.095073
Target:  5'- gGGCGCGGCGGCGGCGacGUUGUugGCa -3'
miRNA:   3'- -UCGCGCCGCCGCCGUacUAAUAugUG- -5'
13942 5' -54.6 NC_003521.1 + 163374 0.68 0.918757
Target:  5'- gAG-GCGGCGGUGGuCGUGGcgcugGCGCc -3'
miRNA:   3'- -UCgCGCCGCCGCC-GUACUaaua-UGUG- -5'
13942 5' -54.6 NC_003521.1 + 225575 0.77 0.51541
Target:  5'- cGGCGCucggguuGGCGGCGGCAUGuggcgaACGCg -3'
miRNA:   3'- -UCGCG-------CCGCCGCCGUACuaaua-UGUG- -5'
13942 5' -54.6 NC_003521.1 + 53427 0.69 0.913021
Target:  5'- cGGCGagGGCGGCcGCGUGuacuguUACGCg -3'
miRNA:   3'- -UCGCg-CCGCCGcCGUACuaau--AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 24176 0.69 0.900852
Target:  5'- gGGCGCGGUGGCagcggaGGCGgucGAccccAUACGCu -3'
miRNA:   3'- -UCGCGCCGCCG------CCGUa--CUaa--UAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 117878 0.69 0.887094
Target:  5'- cGGCGCcggguaggacgggGGCGGCGGUagGUGGUcGUaGCGCc -3'
miRNA:   3'- -UCGCG-------------CCGCCGCCG--UACUAaUA-UGUG- -5'
13942 5' -54.6 NC_003521.1 + 104909 0.69 0.880897
Target:  5'- gAG-GCGGCGGCGucgaGCAUGAag--GCGCu -3'
miRNA:   3'- -UCgCGCCGCCGC----CGUACUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 30896 0.7 0.866503
Target:  5'- aGGCGCgccgccGGUGGCGGUuUGAaUAUAgACg -3'
miRNA:   3'- -UCGCG------CCGCCGCCGuACUaAUAUgUG- -5'
13942 5' -54.6 NC_003521.1 + 200670 0.7 0.858231
Target:  5'- gGGCGUGcagggaggccgaaGCGGCGGCcgGAgccGUGCAg -3'
miRNA:   3'- -UCGCGC-------------CGCCGCCGuaCUaa-UAUGUg -5'
13942 5' -54.6 NC_003521.1 + 153363 0.71 0.835282
Target:  5'- cGCGCGcGCccGGCGGCGUGGUgg-GCc- -3'
miRNA:   3'- uCGCGC-CG--CCGCCGUACUAauaUGug -5'
13942 5' -54.6 NC_003521.1 + 54296 0.71 0.809943
Target:  5'- uGGCgGCGGCGGgGGCAaGAa---GCACg -3'
miRNA:   3'- -UCG-CGCCGCCgCCGUaCUaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 85830 0.71 0.791345
Target:  5'- gGGgGCGGCGGCGGCG-------GCGCc -3'
miRNA:   3'- -UCgCGCCGCCGCCGUacuaauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 58656 0.72 0.764659
Target:  5'- -aCGCGGCcGCGGCA-GAUcccccUGUGCACg -3'
miRNA:   3'- ucGCGCCGcCGCCGUaCUA-----AUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 117914 0.73 0.706611
Target:  5'- aGGUgGCGGCGGCGGCGgggGAccGUAgGCc -3'
miRNA:   3'- -UCG-CGCCGCCGCCGUa--CUaaUAUgUG- -5'
13942 5' -54.6 NC_003521.1 + 171385 0.74 0.64633
Target:  5'- uGGUGuCGGUGGCGGCGgcccUGAg-GUACGCg -3'
miRNA:   3'- -UCGC-GCCGCCGCCGU----ACUaaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 35751 0.75 0.605807
Target:  5'- cGGCGCcuccucGGCGGCGGCAgcUGcgccGUGCACg -3'
miRNA:   3'- -UCGCG------CCGCCGCCGU--ACuaa-UAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.