Results 21 - 40 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13942 | 5' | -54.6 | NC_003521.1 | + | 85830 | 0.71 | 0.791345 |
Target: 5'- gGGgGCGGCGGCGGCG-------GCGCc -3' miRNA: 3'- -UCgCGCCGCCGCCGUacuaauaUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 58656 | 0.72 | 0.764659 |
Target: 5'- -aCGCGGCcGCGGCA-GAUcccccUGUGCACg -3' miRNA: 3'- ucGCGCCGcCGCCGUaCUA-----AUAUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 187733 | 0.74 | 0.636196 |
Target: 5'- cGGCGCGGCGGCGGag-GGgccgACAg -3' miRNA: 3'- -UCGCGCCGCCGCCguaCUaauaUGUg -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 77728 | 0.77 | 0.497168 |
Target: 5'- uAGCaGCGGCGGCGGCAgUGucacggGCACc -3' miRNA: 3'- -UCG-CGCCGCCGCCGU-ACuaaua-UGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 29024 | 0.7 | 0.854391 |
Target: 5'- cAGCGCuagGGCGGUGGCGcggcccgcgcgcgucUGGUUgucggcGUGCGCc -3' miRNA: 3'- -UCGCG---CCGCCGCCGU---------------ACUAA------UAUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 142772 | 0.71 | 0.82617 |
Target: 5'- aAGUgGUGGCGGCGGCcacgacgGUGGU--UGCGCu -3' miRNA: 3'- -UCG-CGCCGCCGCCG-------UACUAauAUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 124726 | 0.73 | 0.736034 |
Target: 5'- gAGCGCGGCGGCGaacGCGUGccgc--CGCg -3' miRNA: 3'- -UCGCGCCGCCGC---CGUACuaauauGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 133056 | 0.79 | 0.389777 |
Target: 5'- cGGCGUcaGGCGGCGGCggGAUg--ACGCg -3' miRNA: 3'- -UCGCG--CCGCCGCCGuaCUAauaUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 54296 | 0.71 | 0.809943 |
Target: 5'- uGGCgGCGGCGGgGGCAaGAa---GCACg -3' miRNA: 3'- -UCG-CGCCGCCgCCGUaCUaauaUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 156329 | 0.9 | 0.095073 |
Target: 5'- gGGCGCGGCGGCGGCGacGUUGUugGCa -3' miRNA: 3'- -UCGCGCCGCCGCCGUacUAAUAugUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 117034 | 0.72 | 0.76278 |
Target: 5'- uGcCGCGGCGGCGGCccacgc-UGCACa -3' miRNA: 3'- uC-GCGCCGCCGCCGuacuaauAUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 164734 | 0.71 | 0.801169 |
Target: 5'- cGGCuGCGGCGGCGGCAgcg----GCGa -3' miRNA: 3'- -UCG-CGCCGCCGCCGUacuaauaUGUg -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 117914 | 0.73 | 0.706611 |
Target: 5'- aGGUgGCGGCGGCGGCGgggGAccGUAgGCc -3' miRNA: 3'- -UCG-CGCCGCCGCCGUa--CUaaUAUgUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 171385 | 0.74 | 0.64633 |
Target: 5'- uGGUGuCGGUGGCGGCGgcccUGAg-GUACGCg -3' miRNA: 3'- -UCGC-GCCGCCGCCGU----ACUaaUAUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 35751 | 0.75 | 0.605807 |
Target: 5'- cGGCGCcuccucGGCGGCGGCAgcUGcgccGUGCACg -3' miRNA: 3'- -UCGCG------CCGCCGCCGU--ACuaa-UAUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 225575 | 0.77 | 0.51541 |
Target: 5'- cGGCGCucggguuGGCGGCGGCAUGuggcgaACGCg -3' miRNA: 3'- -UCGCG-------CCGCCGCCGUACuaaua-UGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 30896 | 0.7 | 0.866503 |
Target: 5'- aGGCGCgccgccGGUGGCGGUuUGAaUAUAgACg -3' miRNA: 3'- -UCGCG------CCGCCGCCGuACUaAUAUgUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 200670 | 0.7 | 0.858231 |
Target: 5'- gGGCGUGcagggaggccgaaGCGGCGGCcgGAgccGUGCAg -3' miRNA: 3'- -UCGCGC-------------CGCCGCCGuaCUaa-UAUGUg -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 201235 | 0.7 | 0.843377 |
Target: 5'- cGGCGUGG-GGCuugcacguGGUggGGUUGUGCACg -3' miRNA: 3'- -UCGCGCCgCCG--------CCGuaCUAAUAUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 138107 | 0.71 | 0.827007 |
Target: 5'- uGGCGgGGCGGCccagccgcGGCGUGA----GCGCc -3' miRNA: 3'- -UCGCgCCGCCG--------CCGUACUaauaUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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