miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13942 5' -54.6 NC_003521.1 + 12375 1.1 0.004429
Target:  5'- gAGCGCGGCGGCGGCAUGAUUAUACACa -3'
miRNA:   3'- -UCGCGCCGCCGCCGUACUAAUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 124726 0.73 0.736034
Target:  5'- gAGCGCGGCGGCGaacGCGUGccgc--CGCg -3'
miRNA:   3'- -UCGCGCCGCCGC---CGUACuaauauGUG- -5'
13942 5' -54.6 NC_003521.1 + 58656 0.72 0.764659
Target:  5'- -aCGCGGCcGCGGCA-GAUcccccUGUGCACg -3'
miRNA:   3'- ucGCGCCGcCGCCGUaCUA-----AUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 71105 0.66 0.977522
Target:  5'- gAG-GCGGCGGCGGgggacgcuuucCAUGAggccUUGcUGCGCc -3'
miRNA:   3'- -UCgCGCCGCCGCC-----------GUACU----AAU-AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 225575 0.77 0.51541
Target:  5'- cGGCGCucggguuGGCGGCGGCAUGuggcgaACGCg -3'
miRNA:   3'- -UCGCG-------CCGCCGCCGUACuaaua-UGUG- -5'
13942 5' -54.6 NC_003521.1 + 71638 0.76 0.555631
Target:  5'- cGGCGuCGGCGGCGGCG-GGUUcgucgccagGCGCg -3'
miRNA:   3'- -UCGC-GCCGCCGCCGUaCUAAua-------UGUG- -5'
13942 5' -54.6 NC_003521.1 + 35751 0.75 0.605807
Target:  5'- cGGCGCcuccucGGCGGCGGCAgcUGcgccGUGCACg -3'
miRNA:   3'- -UCGCG------CCGCCGCCGU--ACuaa-UAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 71760 0.75 0.62606
Target:  5'- cAGCGUcGCGGcCGGCGUGGUUucggguUGCGCu -3'
miRNA:   3'- -UCGCGcCGCC-GCCGUACUAAu-----AUGUG- -5'
13942 5' -54.6 NC_003521.1 + 171385 0.74 0.64633
Target:  5'- uGGUGuCGGUGGCGGCGgcccUGAg-GUACGCg -3'
miRNA:   3'- -UCGC-GCCGCCGCCGU----ACUaaUAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 44687 0.73 0.736034
Target:  5'- aAGgGCGGCGGCaGGUAgagcaGGUUGUAgGCc -3'
miRNA:   3'- -UCgCGCCGCCG-CCGUa----CUAAUAUgUG- -5'
13942 5' -54.6 NC_003521.1 + 164884 0.73 0.706611
Target:  5'- cGGuCGCGGUGGUGGUAUGAgug-GCGg -3'
miRNA:   3'- -UC-GCGCCGCCGCCGUACUaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 187733 0.74 0.636196
Target:  5'- cGGCGCGGCGGCGGag-GGgccgACAg -3'
miRNA:   3'- -UCGCGCCGCCGCCguaCUaauaUGUg -5'
13942 5' -54.6 NC_003521.1 + 156329 0.9 0.095073
Target:  5'- gGGCGCGGCGGCGGCGacGUUGUugGCa -3'
miRNA:   3'- -UCGCGCCGCCGCCGUacUAAUAugUG- -5'
13942 5' -54.6 NC_003521.1 + 117914 0.73 0.706611
Target:  5'- aGGUgGCGGCGGCGGCGgggGAccGUAgGCc -3'
miRNA:   3'- -UCG-CGCCGCCGCCGUa--CUaaUAUgUG- -5'
13942 5' -54.6 NC_003521.1 + 133056 0.79 0.389777
Target:  5'- cGGCGUcaGGCGGCGGCggGAUg--ACGCg -3'
miRNA:   3'- -UCGCG--CCGCCGCCGuaCUAauaUGUG- -5'
13942 5' -54.6 NC_003521.1 + 227098 0.74 0.636196
Target:  5'- cGGCGCGGCGGCgGGCGagGAccccaugGCGCu -3'
miRNA:   3'- -UCGCGCCGCCG-CCGUa-CUaaua---UGUG- -5'
13942 5' -54.6 NC_003521.1 + 142454 0.73 0.716493
Target:  5'- gAGCgGCGGCGGCGGUAgcgGcgUcgACGa -3'
miRNA:   3'- -UCG-CGCCGCCGCCGUa--CuaAuaUGUg -5'
13942 5' -54.6 NC_003521.1 + 117034 0.72 0.76278
Target:  5'- uGcCGCGGCGGCGGCccacgc-UGCACa -3'
miRNA:   3'- uC-GCGCCGCCGCCGuacuaauAUGUG- -5'
13942 5' -54.6 NC_003521.1 + 77728 0.77 0.497168
Target:  5'- uAGCaGCGGCGGCGGCAgUGucacggGCACc -3'
miRNA:   3'- -UCG-CGCCGCCGCCGU-ACuaaua-UGUG- -5'
13942 5' -54.6 NC_003521.1 + 54432 0.76 0.565588
Target:  5'- cGCGCGGCGGUGGCG-GAggcgGCGg -3'
miRNA:   3'- uCGCGCCGCCGCCGUaCUaauaUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.