Results 1 - 20 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13942 | 5' | -54.6 | NC_003521.1 | + | 12375 | 1.1 | 0.004429 |
Target: 5'- gAGCGCGGCGGCGGCAUGAUUAUACACa -3' miRNA: 3'- -UCGCGCCGCCGCCGUACUAAUAUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 156329 | 0.9 | 0.095073 |
Target: 5'- gGGCGCGGCGGCGGCGacGUUGUugGCa -3' miRNA: 3'- -UCGCGCCGCCGCCGUacUAAUAugUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 31699 | 0.8 | 0.342073 |
Target: 5'- aAGUGgGGCGGCGGCAgca-UGUGCGCg -3' miRNA: 3'- -UCGCgCCGCCGCCGUacuaAUAUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 207443 | 0.8 | 0.347416 |
Target: 5'- gAGCgGCGGCuGGCGGCGugugugagugacggUGAUUAUAUACa -3' miRNA: 3'- -UCG-CGCCG-CCGCCGU--------------ACUAAUAUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 141361 | 0.79 | 0.389777 |
Target: 5'- gGGUGCGGCGGCGGUcgGug---ACGCg -3' miRNA: 3'- -UCGCGCCGCCGCCGuaCuaauaUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 168544 | 0.79 | 0.406617 |
Target: 5'- cAGCGCGGCGGCGGCGcUGGcgGgcUGCGg -3' miRNA: 3'- -UCGCGCCGCCGCCGU-ACUaaU--AUGUg -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 133056 | 0.79 | 0.389777 |
Target: 5'- cGGCGUcaGGCGGCGGCggGAUg--ACGCg -3' miRNA: 3'- -UCGCG--CCGCCGCCGuaCUAauaUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 111951 | 0.78 | 0.441629 |
Target: 5'- uGGCGCGGCGGCaGgAUGAgucuguUGCGCa -3' miRNA: 3'- -UCGCGCCGCCGcCgUACUaau---AUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 77728 | 0.77 | 0.497168 |
Target: 5'- uAGCaGCGGCGGCGGCAgUGucacggGCACc -3' miRNA: 3'- -UCG-CGCCGCCGCCGU-ACuaaua-UGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 225575 | 0.77 | 0.51541 |
Target: 5'- cGGCGCucggguuGGCGGCGGCAUGuggcgaACGCg -3' miRNA: 3'- -UCGCG-------CCGCCGCCGUACuaaua-UGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 54432 | 0.76 | 0.565588 |
Target: 5'- cGCGCGGCGGUGGCG-GAggcgGCGg -3' miRNA: 3'- uCGCGCCGCCGCCGUaCUaauaUGUg -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 71638 | 0.76 | 0.555631 |
Target: 5'- cGGCGuCGGCGGCGGCG-GGUUcgucgccagGCGCg -3' miRNA: 3'- -UCGC-GCCGCCGCCGUaCUAAua-------UGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 92018 | 0.76 | 0.545726 |
Target: 5'- aGGCGCGGCGGCGGCGgcg--GUGgGu -3' miRNA: 3'- -UCGCGCCGCCGCCGUacuaaUAUgUg -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 168435 | 0.76 | 0.545726 |
Target: 5'- gGGcCGCGGCGGCGggcgugaagaGCGUGAUgggGCGCu -3' miRNA: 3'- -UC-GCGCCGCCGC----------CGUACUAauaUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 43118 | 0.75 | 0.599744 |
Target: 5'- aAGCGCuGCGGCgagcgcucggcgcugGGCGUGGagGUGCACg -3' miRNA: 3'- -UCGCGcCGCCG---------------CCGUACUaaUAUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 127157 | 0.75 | 0.605807 |
Target: 5'- aGGCGCGGUuguuggucauGGcCGGCAUGAg---GCACa -3' miRNA: 3'- -UCGCGCCG----------CC-GCCGUACUaauaUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 198427 | 0.75 | 0.62606 |
Target: 5'- uGGUGaCGGUGGCGGCcAUG-UUGUAUGCg -3' miRNA: 3'- -UCGC-GCCGCCGCCG-UACuAAUAUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 71760 | 0.75 | 0.62606 |
Target: 5'- cAGCGUcGCGGcCGGCGUGGUUucggguUGCGCu -3' miRNA: 3'- -UCGCGcCGCC-GCCGUACUAAu-----AUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 35751 | 0.75 | 0.605807 |
Target: 5'- cGGCGCcuccucGGCGGCGGCAgcUGcgccGUGCACg -3' miRNA: 3'- -UCGCG------CCGCCGCCGU--ACuaa-UAUGUG- -5' |
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13942 | 5' | -54.6 | NC_003521.1 | + | 227098 | 0.74 | 0.636196 |
Target: 5'- cGGCGCGGCGGCgGGCGagGAccccaugGCGCu -3' miRNA: 3'- -UCGCGCCGCCG-CCGUa-CUaaua---UGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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