miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13947 3' -62.4 NC_003521.1 + 5485 0.66 0.806324
Target:  5'- cCCGUUCcCCCCuuagaucuGGcCGUCUCgGCAGGa -3'
miRNA:   3'- -GGCAGGaGGGG--------CCaGCGGAG-CGUCCg -5'
13947 3' -62.4 NC_003521.1 + 180813 0.66 0.806324
Target:  5'- gCG-CCaCCCCGGUaCGCCgcggagaCGguGGUg -3'
miRNA:   3'- gGCaGGaGGGGCCA-GCGGa------GCguCCG- -5'
13947 3' -62.4 NC_003521.1 + 132655 0.66 0.806324
Target:  5'- gCGUCUg--CCGGaUGaCCUCGCGGGUg -3'
miRNA:   3'- gGCAGGaggGGCCaGC-GGAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 72692 0.66 0.806324
Target:  5'- cCCGUCCaCCCaCGG-CGCUgUCGUccucGGCg -3'
miRNA:   3'- -GGCAGGaGGG-GCCaGCGG-AGCGu---CCG- -5'
13947 3' -62.4 NC_003521.1 + 30075 0.66 0.806324
Target:  5'- gCCGUCC-CCgCCGGcCGCUcacgguaGCAGcGCc -3'
miRNA:   3'- -GGCAGGaGG-GGCCaGCGGag-----CGUC-CG- -5'
13947 3' -62.4 NC_003521.1 + 100765 0.66 0.806324
Target:  5'- aCCGUCCgacgCCCgCGGUgcCaCCUgGC-GGCg -3'
miRNA:   3'- -GGCAGGa---GGG-GCCA--GcGGAgCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 4507 0.66 0.806324
Target:  5'- cUCGUCCUCCUccccgucuCGGUCcuCCUCcCGGGg -3'
miRNA:   3'- -GGCAGGAGGG--------GCCAGc-GGAGcGUCCg -5'
13947 3' -62.4 NC_003521.1 + 213164 0.66 0.805514
Target:  5'- gCCGUCCUcgaguccaccgacCCCCcGUCGCC-CGCGu-- -3'
miRNA:   3'- -GGCAGGA-------------GGGGcCAGCGGaGCGUccg -5'
13947 3' -62.4 NC_003521.1 + 152599 0.66 0.803891
Target:  5'- aCGauggCCUCCUCGG-CGCCcuggUuggucaccaggcggCGCAGGCg -3'
miRNA:   3'- gGCa---GGAGGGGCCaGCGG----A--------------GCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 36751 0.66 0.803891
Target:  5'- cCCuUCCUCUCgcuguccaaggacgCGcGUgGCCUgGCGGGCg -3'
miRNA:   3'- -GGcAGGAGGG--------------GC-CAgCGGAgCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 236543 0.66 0.798166
Target:  5'- -gGUCCUUCCC--UCGCUUCuCAGGUu -3'
miRNA:   3'- ggCAGGAGGGGccAGCGGAGcGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 168763 0.66 0.798166
Target:  5'- gCCGUCCUCCgCCuc-CGUCUCGCc-GCc -3'
miRNA:   3'- -GGCAGGAGG-GGccaGCGGAGCGucCG- -5'
13947 3' -62.4 NC_003521.1 + 127288 0.66 0.798166
Target:  5'- aCGUCCgacacgCCgUGGUggcgCGCCUCGauguuGGCg -3'
miRNA:   3'- gGCAGGa-----GGgGCCA----GCGGAGCgu---CCG- -5'
13947 3' -62.4 NC_003521.1 + 88917 0.66 0.798166
Target:  5'- aCCGaCCUggcggCCCUcugCGCCUCGCuGGGCu -3'
miRNA:   3'- -GGCaGGA-----GGGGccaGCGGAGCG-UCCG- -5'
13947 3' -62.4 NC_003521.1 + 211382 0.66 0.798166
Target:  5'- gCGUCCUCggcgCCUGGcugcugaGCCUCGgcgcgacggaCAGGCa -3'
miRNA:   3'- gGCAGGAG----GGGCCag-----CGGAGC----------GUCCG- -5'
13947 3' -62.4 NC_003521.1 + 142535 0.66 0.795694
Target:  5'- uCC-UCUUCCCUGaggagugacggcuuGUCGCC-CGCcAGGCu -3'
miRNA:   3'- -GGcAGGAGGGGC--------------CAGCGGaGCG-UCCG- -5'
13947 3' -62.4 NC_003521.1 + 92040 0.66 0.789883
Target:  5'- -gGUCCgggggUCCCCGGggUGCCUCccguaGCGauGGCg -3'
miRNA:   3'- ggCAGG-----AGGGGCCa-GCGGAG-----CGU--CCG- -5'
13947 3' -62.4 NC_003521.1 + 140869 0.66 0.789883
Target:  5'- aCGgCCUCCUCGaagcggagCGUCUCGCcGGCc -3'
miRNA:   3'- gGCaGGAGGGGCca------GCGGAGCGuCCG- -5'
13947 3' -62.4 NC_003521.1 + 122493 0.66 0.789883
Target:  5'- gCGcUCagUCgCCGGcaccCGCgCUCGCAGGCa -3'
miRNA:   3'- gGC-AGg-AGgGGCCa---GCG-GAGCGUCCG- -5'
13947 3' -62.4 NC_003521.1 + 223016 0.66 0.78148
Target:  5'- gUCGUCgUCCgCCGGUCGCaCggccaGCAcGCc -3'
miRNA:   3'- -GGCAGgAGG-GGCCAGCG-Gag---CGUcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.