miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 5' -55.7 NC_003521.1 + 150234 0.66 0.958078
Target:  5'- --cCCGugCUGCUGCugaccacGGcCGAGGgGg -3'
miRNA:   3'- uuuGGCugGACGACGua-----CC-GCUUCgC- -5'
13948 5' -55.7 NC_003521.1 + 200761 0.66 0.958078
Target:  5'- --uCCGGCCUccGCUGCGggucccggggggUGGgGggGUGu -3'
miRNA:   3'- uuuGGCUGGA--CGACGU------------ACCgCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 71388 0.66 0.958078
Target:  5'- -cGCCGACgCcGUcguccGCGUGaGCGAGGCGg -3'
miRNA:   3'- uuUGGCUG-GaCGa----CGUAC-CGCUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 192040 0.66 0.958078
Target:  5'- -cGCCGGCgUGCgcgGCAgacgcGGCGuccgcGGCGg -3'
miRNA:   3'- uuUGGCUGgACGa--CGUa----CCGCu----UCGC- -5'
13948 5' -55.7 NC_003521.1 + 74094 0.66 0.958078
Target:  5'- uGGCCGACaUGCUGCGcgacUGcGCGAcgcccaugGGCGc -3'
miRNA:   3'- uUUGGCUGgACGACGU----AC-CGCU--------UCGC- -5'
13948 5' -55.7 NC_003521.1 + 240554 0.66 0.958078
Target:  5'- --uCCGGCCUccGCUGCGggucccggggggUGGgGggGUGu -3'
miRNA:   3'- uuuGGCUGGA--CGACGU------------ACCgCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 166117 0.66 0.958078
Target:  5'- -cGCgGGCCUGCUuCAgGGCGGccGGCa -3'
miRNA:   3'- uuUGgCUGGACGAcGUaCCGCU--UCGc -5'
13948 5' -55.7 NC_003521.1 + 54998 0.66 0.958078
Target:  5'- uGGCCGACUUGUaggGCuuaaGGCGcAGCGc -3'
miRNA:   3'- uUUGGCUGGACGa--CGua--CCGCuUCGC- -5'
13948 5' -55.7 NC_003521.1 + 59345 0.66 0.958078
Target:  5'- uGAGCCacGCCacGCUGCA-GGCGgcGCGc -3'
miRNA:   3'- -UUUGGc-UGGa-CGACGUaCCGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 5 0.66 0.958078
Target:  5'- --uCCGGCCUccGCUGCGggucccggggggUGGgGggGUGu -3'
miRNA:   3'- uuuGGCUGGA--CGACGU------------ACCgCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 54934 0.66 0.956972
Target:  5'- cAGCuCGGCCUGCgUGCAcggccaggacaucgUGcGCGAgAGCGa -3'
miRNA:   3'- uUUG-GCUGGACG-ACGU--------------AC-CGCU-UCGC- -5'
13948 5' -55.7 NC_003521.1 + 19679 0.66 0.954312
Target:  5'- -uGCCGGCUgcaGUUGUugucGGCGAGGCu -3'
miRNA:   3'- uuUGGCUGGa--CGACGua--CCGCUUCGc -5'
13948 5' -55.7 NC_003521.1 + 92648 0.66 0.954312
Target:  5'- gGAGCCGGCggaGCgacgGCAgcgGGCG-AGCGg -3'
miRNA:   3'- -UUUGGCUGga-CGa---CGUa--CCGCuUCGC- -5'
13948 5' -55.7 NC_003521.1 + 66051 0.66 0.954312
Target:  5'- gGGGCCGGCCgaaGUUGUccGGCGGcGGUGu -3'
miRNA:   3'- -UUUGGCUGGa--CGACGuaCCGCU-UCGC- -5'
13948 5' -55.7 NC_003521.1 + 232555 0.66 0.954312
Target:  5'- uGGCCuacuacggGGgCUGCUGUGUGGUG-AGCGg -3'
miRNA:   3'- uUUGG--------CUgGACGACGUACCGCuUCGC- -5'
13948 5' -55.7 NC_003521.1 + 87746 0.66 0.950324
Target:  5'- gAAGCCcgaGACCaGCUGCGgacaggUGGCGcAGGCc -3'
miRNA:   3'- -UUUGG---CUGGaCGACGU------ACCGC-UUCGc -5'
13948 5' -55.7 NC_003521.1 + 78852 0.66 0.950324
Target:  5'- -cGCCGACg-GC-GC-UGGCGggGUGg -3'
miRNA:   3'- uuUGGCUGgaCGaCGuACCGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 217245 0.66 0.950324
Target:  5'- gAGGCCGACCUGC----UGGCGcuGUGu -3'
miRNA:   3'- -UUUGGCUGGACGacguACCGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 73115 0.66 0.949913
Target:  5'- -cACCGugGCCacggaggUGCUGCAcGGCGGgggcAGCGg -3'
miRNA:   3'- uuUGGC--UGG-------ACGACGUaCCGCU----UCGC- -5'
13948 5' -55.7 NC_003521.1 + 103032 0.66 0.949084
Target:  5'- uAGCCGuACCcagacaugcgcaggUGCUGCAgacagGGCGGGuGCGc -3'
miRNA:   3'- uUUGGC-UGG--------------ACGACGUa----CCGCUU-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.