miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 212231 0.7 0.945496
Target:  5'- uGGUGGCGGUGCGcagcagcccgccgucCGCGUAgucGgUGGCc -3'
miRNA:   3'- -CCACUGCUACGCaa-------------GCGCGU---UgACCG- -5'
13949 3' -52.7 NC_003521.1 + 204720 0.73 0.839171
Target:  5'- cGUGGCGcgGC-UUCGCGUGcugcuuuccgugcuGCUGGCg -3'
miRNA:   3'- cCACUGCuaCGcAAGCGCGU--------------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 204326 0.73 0.849467
Target:  5'- cGUGugG-UGCGacUGCgGCGACUGGCa -3'
miRNA:   3'- cCACugCuACGCaaGCG-CGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 203717 0.7 0.958596
Target:  5'- uGGUcGGCGAcugcgGUGUUCGagGCGGCgggGGCg -3'
miRNA:   3'- -CCA-CUGCUa----CGCAAGCg-CGUUGa--CCG- -5'
13949 3' -52.7 NC_003521.1 + 202085 0.68 0.981003
Target:  5'- cGG-GACGggGCccggCGCcucuaauaccGCAGCUGGCg -3'
miRNA:   3'- -CCaCUGCuaCGcaa-GCG----------CGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 201586 0.66 0.996504
Target:  5'- uGGUGgccaccagcACGAUccaGgGgUCGCGCGgcgagaGCUGGCg -3'
miRNA:   3'- -CCAC---------UGCUA---CgCaAGCGCGU------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 201049 0.66 0.992796
Target:  5'- cGGUGugGAUcGCGgaCG-GCGAUuaUGGUu -3'
miRNA:   3'- -CCACugCUA-CGCaaGCgCGUUG--ACCG- -5'
13949 3' -52.7 NC_003521.1 + 200380 0.69 0.968468
Target:  5'- aGGUGA--GUGUGUgcuggCGCGCGGCUGugacuGCa -3'
miRNA:   3'- -CCACUgcUACGCAa----GCGCGUUGAC-----CG- -5'
13949 3' -52.7 NC_003521.1 + 196938 0.66 0.995276
Target:  5'- --cGACGccGUcgUCGagcaGCAGCUGGCg -3'
miRNA:   3'- ccaCUGCuaCGcaAGCg---CGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 195370 0.66 0.995928
Target:  5'- -uUGGCGggGCGUcUGCGgGACgcgGGUc -3'
miRNA:   3'- ccACUGCuaCGCAaGCGCgUUGa--CCG- -5'
13949 3' -52.7 NC_003521.1 + 193155 0.66 0.993717
Target:  5'- -aUGGCGGggGCGUcugcugcugcugUUGCGCAGCUGccGCc -3'
miRNA:   3'- ccACUGCUa-CGCA------------AGCGCGUUGAC--CG- -5'
13949 3' -52.7 NC_003521.1 + 192548 0.66 0.995276
Target:  5'- cGGUgccGACGAacgGCGUggaGaCGCcGCUGGUg -3'
miRNA:   3'- -CCA---CUGCUa--CGCAag-C-GCGuUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 187993 0.67 0.99177
Target:  5'- cGUGGCGAUGagacaagUCaCGUAccGCUGGCg -3'
miRNA:   3'- cCACUGCUACgca----AGcGCGU--UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 186931 0.7 0.950946
Target:  5'- --gGACGAgcGCGUgacugucgUUGCGCAGCaGGCa -3'
miRNA:   3'- ccaCUGCUa-CGCA--------AGCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 180966 0.69 0.962096
Target:  5'- cGGUGAUGGgcaucuugUGgGUUCGCGUu-UUGGUa -3'
miRNA:   3'- -CCACUGCU--------ACgCAAGCGCGuuGACCG- -5'
13949 3' -52.7 NC_003521.1 + 180361 0.71 0.932454
Target:  5'- cGUGACGGUGCugcucguGUUgGUGguACUGGg -3'
miRNA:   3'- cCACUGCUACG-------CAAgCGCguUGACCg -5'
13949 3' -52.7 NC_003521.1 + 172807 0.7 0.958596
Target:  5'- cGUGGCGGUGagGcUCaCGCAGCUGGg -3'
miRNA:   3'- cCACUGCUACg-CaAGcGCGUUGACCg -5'
13949 3' -52.7 NC_003521.1 + 171400 0.66 0.994541
Target:  5'- gGGUGACGGUG-GUccUgGUGUcGgUGGCg -3'
miRNA:   3'- -CCACUGCUACgCA--AgCGCGuUgACCG- -5'
13949 3' -52.7 NC_003521.1 + 167692 0.69 0.968468
Target:  5'- cGGUGACGAcGC--UCGUGgAGgaGGCg -3'
miRNA:   3'- -CCACUGCUaCGcaAGCGCgUUgaCCG- -5'
13949 3' -52.7 NC_003521.1 + 166842 0.72 0.892618
Target:  5'- cGGUGAgGAUacgcagGCGgUgGCGCGGCgGGCg -3'
miRNA:   3'- -CCACUgCUA------CGCaAgCGCGUUGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.