miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 240267 0.66 0.992796
Target:  5'- cGGUGugGAUcGCGgaCG-GCGAUuaUGGUu -3'
miRNA:   3'- -CCACugCUA-CGCaaGCgCGUUG--ACCG- -5'
13949 3' -52.7 NC_003521.1 + 239729 0.66 0.996504
Target:  5'- uGGUGgccaccagcACGAUccaGgGgUCGCGCGgcgagaGCUGGCg -3'
miRNA:   3'- -CCAC---------UGCUA---CgCaAGCGCGU------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 239230 0.68 0.981003
Target:  5'- cGG-GACGggGCccggCGCcucuaauaccGCAGCUGGCg -3'
miRNA:   3'- -CCaCUGCuaCGcaa-GCG----------CGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 234564 0.68 0.978858
Target:  5'- cGGUGACGAgggcggucUGCGUccCGCcccagggcaggGCGACgaggUGGCg -3'
miRNA:   3'- -CCACUGCU--------ACGCAa-GCG-----------CGUUG----ACCG- -5'
13949 3' -52.7 NC_003521.1 + 232278 0.67 0.990632
Target:  5'- cGUGACGGUGgaUGUcgUCGCGCccACgguccgGGCa -3'
miRNA:   3'- cCACUGCUAC--GCA--AGCGCGu-UGa-----CCG- -5'
13949 3' -52.7 NC_003521.1 + 229811 0.66 0.995928
Target:  5'- cGGcUGACGuucauUGCGgccgGUGCGACcGGCu -3'
miRNA:   3'- -CC-ACUGCu----ACGCaag-CGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 228726 0.66 0.995345
Target:  5'- uGGUGgGCGAgucgcuacccuccgGCcucuuucacgccgaGUUCGUGCuGCUGGCu -3'
miRNA:   3'- -CCAC-UGCUa-------------CG--------------CAAGCGCGuUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 225872 0.73 0.841575
Target:  5'- aGGUGcCGGUGCuccaUGCGCGuCUGGCg -3'
miRNA:   3'- -CCACuGCUACGcaa-GCGCGUuGACCG- -5'
13949 3' -52.7 NC_003521.1 + 225798 0.83 0.374487
Target:  5'- uGGUGACGAcGCGUUcgucgaCGCGCGAC-GGCg -3'
miRNA:   3'- -CCACUGCUaCGCAA------GCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 225759 0.66 0.996504
Target:  5'- gGGUGAucagcgcgcUGGUGCagcaGuCGCGACUGGUg -3'
miRNA:   3'- -CCACU---------GCUACGcaagC-GCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 225138 0.68 0.981003
Target:  5'- uGGUcGACGugguUGCGgacccagUCGCGCAccaccucggcGCUGuGCu -3'
miRNA:   3'- -CCA-CUGCu---ACGCa------AGCGCGU----------UGAC-CG- -5'
13949 3' -52.7 NC_003521.1 + 224813 0.71 0.922575
Target:  5'- cGUGGCGuaggGCG-UC-UGCGGCUGGCg -3'
miRNA:   3'- cCACUGCua--CGCaAGcGCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 224487 0.66 0.994541
Target:  5'- cGGUGugGAccGCGacuaCGgGCGucaguaccGCUGGCu -3'
miRNA:   3'- -CCACugCUa-CGCaa--GCgCGU--------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 223413 0.68 0.984798
Target:  5'- cGGUGGCccUGCGUaacccgGC-CAACUGGCu -3'
miRNA:   3'- -CCACUGcuACGCAag----CGcGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 220353 0.71 0.922575
Target:  5'- -cUGGCGGugcaucagcUGCGUguaCGCGCuGCUGGUg -3'
miRNA:   3'- ccACUGCU---------ACGCAa--GCGCGuUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 219355 0.66 0.99363
Target:  5'- uGGUGACGAUGCccgaacagGUcUCGCugcucauGCAcCUGGg -3'
miRNA:   3'- -CCACUGCUACG--------CA-AGCG-------CGUuGACCg -5'
13949 3' -52.7 NC_003521.1 + 218745 0.66 0.992796
Target:  5'- cGG-GACGGucccccaugcUGCGUUCGCG-GGCUcGGUc -3'
miRNA:   3'- -CCaCUGCU----------ACGCAAGCGCgUUGA-CCG- -5'
13949 3' -52.7 NC_003521.1 + 215271 0.77 0.675673
Target:  5'- -cUGGCGGUGCGUUacgaGaCGCcGCUGGCu -3'
miRNA:   3'- ccACUGCUACGCAAg---C-GCGuUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 213619 0.69 0.968468
Target:  5'- gGGUGGCGGU-CGc-CGCGCAGCaGGa -3'
miRNA:   3'- -CCACUGCUAcGCaaGCGCGUUGaCCg -5'
13949 3' -52.7 NC_003521.1 + 212773 0.73 0.867619
Target:  5'- aGGUGACGAUGcCGUagagGCGCAcgauccagagaaaauGCUGGa -3'
miRNA:   3'- -CCACUGCUAC-GCAag--CGCGU---------------UGACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.