Results 21 - 40 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13949 | 3' | -52.7 | NC_003521.1 | + | 26518 | 0.7 | 0.950946 |
Target: 5'- gGGUGcagcaGCGcugGCGUUCcguGCGCGACgaggGGCu -3' miRNA: 3'- -CCAC-----UGCua-CGCAAG---CGCGUUGa---CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 141177 | 0.7 | 0.937792 |
Target: 5'- aGGUGACGcgaucgGCGUU-GCGCAg--GGCg -3' miRNA: 3'- -CCACUGCua----CGCAAgCGCGUugaCCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 54452 | 0.73 | 0.857169 |
Target: 5'- uGGUGGCGGcaaGuCGacgUCGCGCGGCggUGGCg -3' miRNA: 3'- -CCACUGCUa--C-GCa--AGCGCGUUG--ACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 215271 | 0.77 | 0.675673 |
Target: 5'- -cUGGCGGUGCGUUacgaGaCGCcGCUGGCu -3' miRNA: 3'- ccACUGCUACGCAAg---C-GCGuUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 234564 | 0.68 | 0.978858 |
Target: 5'- cGGUGACGAgggcggucUGCGUccCGCcccagggcaggGCGACgaggUGGCg -3' miRNA: 3'- -CCACUGCU--------ACGCAa-GCG-----------CGUUG----ACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 141843 | 0.69 | 0.968468 |
Target: 5'- -cUGACGGUGCGcgcgucgUCGCGCGcgagguccagacAgaGGCg -3' miRNA: 3'- ccACUGCUACGCa------AGCGCGU------------UgaCCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 43233 | 0.71 | 0.932951 |
Target: 5'- cGGUGGgCGccgGCGggUCGCGCucGCUGGg -3' miRNA: 3'- -CCACU-GCua-CGCa-AGCGCGu-UGACCg -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 123705 | 0.77 | 0.645583 |
Target: 5'- cGGUG-CaGGUGCGgcaCGCGCuguGCUGGCa -3' miRNA: 3'- -CCACuG-CUACGCaa-GCGCGu--UGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 200380 | 0.69 | 0.968468 |
Target: 5'- aGGUGA--GUGUGUgcuggCGCGCGGCUGugacuGCa -3' miRNA: 3'- -CCACUgcUACGCAa----GCGCGUUGAC-----CG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 225798 | 0.83 | 0.374487 |
Target: 5'- uGGUGACGAcGCGUUcgucgaCGCGCGAC-GGCg -3' miRNA: 3'- -CCACUGCUaCGCAA------GCGCGUUGaCCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 71017 | 0.71 | 0.932951 |
Target: 5'- uGGUGAuCGGccGCGgcgCGCuGCAGCUGGa -3' miRNA: 3'- -CCACU-GCUa-CGCaa-GCG-CGUUGACCg -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 153997 | 0.7 | 0.958596 |
Target: 5'- uGGUGggccACGGUGgGcaUCGUGCcGCUGGUg -3' miRNA: 3'- -CCAC----UGCUACgCa-AGCGCGuUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 60283 | 0.72 | 0.905282 |
Target: 5'- aGGUGAggcCGGUGCugUCGCGCuGCUgcaGGCu -3' miRNA: 3'- -CCACU---GCUACGcaAGCGCGuUGA---CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 154490 | 0.72 | 0.892617 |
Target: 5'- cGGcGGCGAaGCGcUCGCGCGAgaGGg -3' miRNA: 3'- -CCaCUGCUaCGCaAGCGCGUUgaCCg -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 164740 | 0.74 | 0.833498 |
Target: 5'- cGGUGACGGcUGCGgcggCG-GCAGC-GGCg -3' miRNA: 3'- -CCACUGCU-ACGCaa--GCgCGUUGaCCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 29013 | 0.77 | 0.675673 |
Target: 5'- cGGUGGCGcgGCccgCGCGCGuCUGGUu -3' miRNA: 3'- -CCACUGCuaCGcaaGCGCGUuGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 42482 | 0.68 | 0.98298 |
Target: 5'- aGGUugUGGUGCGaUUGCGaCAgccGCUGGCc -3' miRNA: 3'- -CCAcuGCUACGCaAGCGC-GU---UGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 239230 | 0.68 | 0.981003 |
Target: 5'- cGG-GACGggGCccggCGCcucuaauaccGCAGCUGGCg -3' miRNA: 3'- -CCaCUGCuaCGcaa-GCG----------CGUUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 164692 | 0.69 | 0.973253 |
Target: 5'- cGGUGGCGcugcuagcaccagcgGCGgugUgGUGguGCUGGCg -3' miRNA: 3'- -CCACUGCua-------------CGCa--AgCGCguUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 150266 | 0.69 | 0.971351 |
Target: 5'- aGGUGGCGu--CG-UCGUGCGGCgGGUg -3' miRNA: 3'- -CCACUGCuacGCaAGCGCGUUGaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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