miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 17809 1.15 0.004724
Target:  5'- cGGUGACGAUGCGUUCGCGCAACUGGCu -3'
miRNA:   3'- -CCACUGCUACGCAAGCGCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 43233 0.71 0.932951
Target:  5'- cGGUGGgCGccgGCGggUCGCGCucGCUGGg -3'
miRNA:   3'- -CCACU-GCua-CGCa-AGCGCGu-UGACCg -5'
13949 3' -52.7 NC_003521.1 + 141177 0.7 0.937792
Target:  5'- aGGUGACGcgaucgGCGUU-GCGCAg--GGCg -3'
miRNA:   3'- -CCACUGCua----CGCAAgCGCGUugaCCG- -5'
13949 3' -52.7 NC_003521.1 + 5958 0.66 0.996504
Target:  5'- cGGUGACGgcGCccGUUCccCGCGGacgGGCg -3'
miRNA:   3'- -CCACUGCuaCG--CAAGc-GCGUUga-CCG- -5'
13949 3' -52.7 NC_003521.1 + 29013 0.77 0.675673
Target:  5'- cGGUGGCGcgGCccgCGCGCGuCUGGUu -3'
miRNA:   3'- -CCACUGCuaCGcaaGCGCGUuGACCG- -5'
13949 3' -52.7 NC_003521.1 + 64796 0.76 0.695575
Target:  5'- --aGACGGgcgucgGCGUcgUCGCGCAACaUGGCc -3'
miRNA:   3'- ccaCUGCUa-----CGCA--AGCGCGUUG-ACCG- -5'
13949 3' -52.7 NC_003521.1 + 164740 0.74 0.833498
Target:  5'- cGGUGACGGcUGCGgcggCG-GCAGC-GGCg -3'
miRNA:   3'- -CCACUGCU-ACGCaa--GCgCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 204720 0.73 0.839171
Target:  5'- cGUGGCGcgGC-UUCGCGUGcugcuuuccgugcuGCUGGCg -3'
miRNA:   3'- cCACUGCuaCGcAAGCGCGU--------------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 154490 0.72 0.892617
Target:  5'- cGGcGGCGAaGCGcUCGCGCGAgaGGg -3'
miRNA:   3'- -CCaCUGCUaCGCaAGCGCGUUgaCCg -5'
13949 3' -52.7 NC_003521.1 + 220353 0.71 0.922575
Target:  5'- -cUGGCGGugcaucagcUGCGUguaCGCGCuGCUGGUg -3'
miRNA:   3'- ccACUGCU---------ACGCAa--GCGCGuUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 74286 0.72 0.905282
Target:  5'- aGGUGACGcgGCGguagagcUCGCGCAguACcaGGUu -3'
miRNA:   3'- -CCACUGCuaCGCa------AGCGCGU--UGa-CCG- -5'
13949 3' -52.7 NC_003521.1 + 54452 0.73 0.857169
Target:  5'- uGGUGGCGGcaaGuCGacgUCGCGCGGCggUGGCg -3'
miRNA:   3'- -CCACUGCUa--C-GCa--AGCGCGUUG--ACCG- -5'
13949 3' -52.7 NC_003521.1 + 225798 0.83 0.374487
Target:  5'- uGGUGACGAcGCGUUcgucgaCGCGCGAC-GGCg -3'
miRNA:   3'- -CCACUGCUaCGCAA------GCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 60283 0.72 0.905282
Target:  5'- aGGUGAggcCGGUGCugUCGCGCuGCUgcaGGCu -3'
miRNA:   3'- -CCACU---GCUACGcaAGCGCGuUGA---CCG- -5'
13949 3' -52.7 NC_003521.1 + 123705 0.77 0.645583
Target:  5'- cGGUG-CaGGUGCGgcaCGCGCuguGCUGGCa -3'
miRNA:   3'- -CCACuG-CUACGCaa-GCGCGu--UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 204326 0.73 0.849467
Target:  5'- cGUGugG-UGCGacUGCgGCGACUGGCa -3'
miRNA:   3'- cCACugCuACGCaaGCG-CGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 90333 0.72 0.905282
Target:  5'- cGUGcGCGcccgcccgcguGUGCGcUCGCGCGACgacgGGCg -3'
miRNA:   3'- cCAC-UGC-----------UACGCaAGCGCGUUGa---CCG- -5'
13949 3' -52.7 NC_003521.1 + 71017 0.71 0.932951
Target:  5'- uGGUGAuCGGccGCGgcgCGCuGCAGCUGGa -3'
miRNA:   3'- -CCACU-GCUa-CGCaa-GCG-CGUUGACCg -5'
13949 3' -52.7 NC_003521.1 + 215271 0.77 0.675673
Target:  5'- -cUGGCGGUGCGUUacgaGaCGCcGCUGGCu -3'
miRNA:   3'- ccACUGCUACGCAAg---C-GCGuUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 130186 0.74 0.808236
Target:  5'- --cGGCcagGUGUUCGCGCAGCaGGCg -3'
miRNA:   3'- ccaCUGcuaCGCAAGCGCGUUGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.