miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13951 3' -53.3 NC_003521.1 + 27381 0.66 0.992117
Target:  5'- aUGGaGUUCGCCCgcaCCGGCCuGCGcgccGUCg -3'
miRNA:   3'- -ACUgCAAGUGGGag-GGUUGG-CGU----UAG- -5'
13951 3' -53.3 NC_003521.1 + 117251 0.66 0.992117
Target:  5'- cGGCGccgcCGCCaUCCCGccACCGCcGUCg -3'
miRNA:   3'- aCUGCaa--GUGGgAGGGU--UGGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 27837 0.66 0.992117
Target:  5'- gGACGUg--UUCgUCCAGCCGCGGUCu -3'
miRNA:   3'- aCUGCAaguGGGaGGGUUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 212082 0.66 0.992117
Target:  5'- aGACGgu--CCC-CCgGACCGCAAa- -3'
miRNA:   3'- aCUGCaaguGGGaGGgUUGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 118902 0.66 0.991007
Target:  5'- aUGAgGUccUCGCCCUCgUCGgcGCCGCGGc- -3'
miRNA:   3'- -ACUgCA--AGUGGGAG-GGU--UGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 111464 0.66 0.991007
Target:  5'- cGGCGccaUCGCCCagCCCAccguCCGCGgcgccGUCg -3'
miRNA:   3'- aCUGCa--AGUGGGa-GGGUu---GGCGU-----UAG- -5'
13951 3' -53.3 NC_003521.1 + 49198 0.66 0.991007
Target:  5'- --cCGcUUCuCCCUCCCcGCCGCugauAGUCg -3'
miRNA:   3'- acuGC-AAGuGGGAGGGuUGGCG----UUAG- -5'
13951 3' -53.3 NC_003521.1 + 58100 0.66 0.991007
Target:  5'- cGGCGUUCGgCgUCaCCGGCCGagcuUCa -3'
miRNA:   3'- aCUGCAAGUgGgAG-GGUUGGCguu-AG- -5'
13951 3' -53.3 NC_003521.1 + 49351 0.66 0.991007
Target:  5'- uUGugGauaUCGCCC-CCCGuCCGaCGGUCc -3'
miRNA:   3'- -ACugCa--AGUGGGaGGGUuGGC-GUUAG- -5'
13951 3' -53.3 NC_003521.1 + 215934 0.66 0.99089
Target:  5'- cGGCGUucuggucgcgcuuUCGCUgCUCCCG-CCGCGAc- -3'
miRNA:   3'- aCUGCA-------------AGUGG-GAGGGUuGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 17896 0.66 0.990651
Target:  5'- cGGUGUUCucuUCCUCCCAgcggguucguauacGCCGCGAc- -3'
miRNA:   3'- aCUGCAAGu--GGGAGGGU--------------UGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 236378 0.66 0.990651
Target:  5'- cGuCGUUCuuCCUCCUAccgacguaccucuaACCGCGGUg -3'
miRNA:   3'- aCuGCAAGugGGAGGGU--------------UGGCGUUAg -5'
13951 3' -53.3 NC_003521.1 + 12238 0.66 0.989778
Target:  5'- cGACGgcagaccUCACUCUCgcugCCgAGCUGCAGUCc -3'
miRNA:   3'- aCUGCa------AGUGGGAG----GG-UUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 66601 0.66 0.989778
Target:  5'- cGACGcgC-CCCUgCCCGACCcGCGc-- -3'
miRNA:   3'- aCUGCaaGuGGGA-GGGUUGG-CGUuag -5'
13951 3' -53.3 NC_003521.1 + 108534 0.66 0.989778
Target:  5'- cGACGgcgaccuggUCACCCggacCCUGGCCGUAu-- -3'
miRNA:   3'- aCUGCa--------AGUGGGa---GGGUUGGCGUuag -5'
13951 3' -53.3 NC_003521.1 + 126939 0.66 0.989778
Target:  5'- cUGGCGgu-GCCCUUCC-ACCGCu-UCu -3'
miRNA:   3'- -ACUGCaagUGGGAGGGuUGGCGuuAG- -5'
13951 3' -53.3 NC_003521.1 + 124922 0.66 0.989778
Target:  5'- cGACGccaccUUCACgCUgCCCGACCcgGUGAUCg -3'
miRNA:   3'- aCUGC-----AAGUGgGA-GGGUUGG--CGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 179966 0.66 0.988979
Target:  5'- aUGACGUucugggggucuuuguUCAUgCUCUCGcggGCCGCcGUCg -3'
miRNA:   3'- -ACUGCA---------------AGUGgGAGGGU---UGGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 196372 0.66 0.98842
Target:  5'- gUGGCGUUgUACUCgcaucgCCgAGCCGCcGUCa -3'
miRNA:   3'- -ACUGCAA-GUGGGa-----GGgUUGGCGuUAG- -5'
13951 3' -53.3 NC_003521.1 + 13199 0.66 0.98842
Target:  5'- aGAUGUUgcUCCUCCCGGCCcUggUCc -3'
miRNA:   3'- aCUGCAAguGGGAGGGUUGGcGuuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.