Results 1 - 20 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13951 | 3' | -53.3 | NC_003521.1 | + | 19560 | 1.1 | 0.007004 |
Target: 5'- aUGACGUUCACCCUCCCAACCGCAAUCu -3' miRNA: 3'- -ACUGCAAGUGGGAGGGUUGGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 116457 | 0.69 | 0.955636 |
Target: 5'- cGACG-UCuCCCUCCUcuCCGCGGc- -3' miRNA: 3'- aCUGCaAGuGGGAGGGuuGGCGUUag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 216031 | 0.68 | 0.959337 |
Target: 5'- gUGACGUUCGCgCCcUUCAGCgGCAacgcGUCg -3' miRNA: 3'- -ACUGCAAGUG-GGaGGGUUGgCGU----UAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 27381 | 0.66 | 0.992117 |
Target: 5'- aUGGaGUUCGCCCgcaCCGGCCuGCGcgccGUCg -3' miRNA: 3'- -ACUgCAAGUGGGag-GGUUGG-CGU----UAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 222495 | 0.71 | 0.893293 |
Target: 5'- cGACugGUUcCugCggCCCAGCCGCGGUCa -3' miRNA: 3'- aCUG--CAA-GugGgaGGGUUGGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 133487 | 0.71 | 0.898488 |
Target: 5'- cGACcgccaUCGCCCcugaacccgcgcCCCGACCGCGGUCg -3' miRNA: 3'- aCUGca---AGUGGGa-----------GGGUUGGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 31262 | 0.71 | 0.899764 |
Target: 5'- cGGCGccgucgUCGCCCcaUCCCGAuCCGCAGc- -3' miRNA: 3'- aCUGCa-----AGUGGG--AGGGUU-GGCGUUag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 235907 | 0.7 | 0.912021 |
Target: 5'- cGGCGagggugCAcCCCUCCCAACugaaacaccaCGCGGUCg -3' miRNA: 3'- aCUGCaa----GU-GGGAGGGUUG----------GCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 113441 | 0.7 | 0.923347 |
Target: 5'- aGACGggCACCUcgcggCCCAucuugGCCGCGAg- -3' miRNA: 3'- aCUGCaaGUGGGa----GGGU-----UGGCGUUag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 77695 | 0.69 | 0.951714 |
Target: 5'- cGGCGg-CAUCCUCUCGGCCGUGgccccGUCg -3' miRNA: 3'- aCUGCaaGUGGGAGGGUUGGCGU-----UAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 135004 | 0.7 | 0.928659 |
Target: 5'- cGGCcUUCACCa--CCAACCGCAAg- -3' miRNA: 3'- aCUGcAAGUGGgagGGUUGGCGUUag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 224291 | 0.7 | 0.917801 |
Target: 5'- cGACGg-CGCCCgcCCCGACCGCc--- -3' miRNA: 3'- aCUGCaaGUGGGa-GGGUUGGCGuuag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 113173 | 0.78 | 0.553653 |
Target: 5'- gUGACGgg-GCCCUCCCAGgCgGCGAUCu -3' miRNA: 3'- -ACUGCaagUGGGAGGGUU-GgCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 70866 | 0.69 | 0.943187 |
Target: 5'- cGACaagCGCUUUCUCAACCGCGAgcUCg -3' miRNA: 3'- aCUGcaaGUGGGAGGGUUGGCGUU--AG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 140757 | 0.74 | 0.734228 |
Target: 5'- gUGACGcgggCGCCUUCCuCAACCGCGGc- -3' miRNA: 3'- -ACUGCaa--GUGGGAGG-GUUGGCGUUag -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 601 | 0.7 | 0.917801 |
Target: 5'- --uCGUUUGCCCUCCUuacCCGCuGUCa -3' miRNA: 3'- acuGCAAGUGGGAGGGuu-GGCGuUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 31183 | 0.69 | 0.943187 |
Target: 5'- cGACGUgccccaggacCGCUCUCgCCuGCCGCAGUUc -3' miRNA: 3'- aCUGCAa---------GUGGGAG-GGuUGGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 77926 | 0.68 | 0.959337 |
Target: 5'- cGGCcugCugUCUCCCGACgGCAGUUc -3' miRNA: 3'- aCUGcaaGugGGAGGGUUGgCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 8071 | 0.72 | 0.841953 |
Target: 5'- aGGCGUUCugCaC-CCCGacacGCCGUAAUCu -3' miRNA: 3'- aCUGCAAGugG-GaGGGU----UGGCGUUAG- -5' |
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13951 | 3' | -53.3 | NC_003521.1 | + | 133268 | 0.71 | 0.899764 |
Target: 5'- gUGGCGgcugUC-CCCgUCCCAACCcCGGUCc -3' miRNA: 3'- -ACUGCa---AGuGGG-AGGGUUGGcGUUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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