miRNA display CGI


Results 21 - 40 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13951 3' -53.3 NC_003521.1 + 211134 0.68 0.972009
Target:  5'- cGACGUaCACCCUgggCCCuacGCCGgUGGUCu -3'
miRNA:   3'- aCUGCAaGUGGGA---GGGu--UGGC-GUUAG- -5'
13951 3' -53.3 NC_003521.1 + 216031 0.68 0.959337
Target:  5'- gUGACGUUCGCgCCcUUCAGCgGCAacgcGUCg -3'
miRNA:   3'- -ACUGCAAGUG-GGaGGGUUGgCGU----UAG- -5'
13951 3' -53.3 NC_003521.1 + 224291 0.7 0.917801
Target:  5'- cGACGg-CGCCCgcCCCGACCGCc--- -3'
miRNA:   3'- aCUGCaaGUGGGa-GGGUUGGCGuuag -5'
13951 3' -53.3 NC_003521.1 + 8071 0.72 0.841953
Target:  5'- aGGCGUUCugCaC-CCCGacacGCCGUAAUCu -3'
miRNA:   3'- aCUGCAAGugG-GaGGGU----UGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 202914 0.66 0.988277
Target:  5'- gGGCGUcCcagcgggGCCgCUCCCAguGCuCGCGGUCg -3'
miRNA:   3'- aCUGCAaG-------UGG-GAGGGU--UG-GCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 233148 0.67 0.977146
Target:  5'- -cGCGUagcUCAUCCUCCagaucGCCGCGGUg -3'
miRNA:   3'- acUGCA---AGUGGGAGGgu---UGGCGUUAg -5'
13951 3' -53.3 NC_003521.1 + 116457 0.69 0.955636
Target:  5'- cGACG-UCuCCCUCCUcuCCGCGGc- -3'
miRNA:   3'- aCUGCaAGuGGGAGGGuuGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 140757 0.74 0.734228
Target:  5'- gUGACGcgggCGCCUUCCuCAACCGCGGc- -3'
miRNA:   3'- -ACUGCaa--GUGGGAGG-GUUGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 119615 0.67 0.974673
Target:  5'- cGGCGUgucCAuggaggccggacCCCUgCCCGACCGCGugcgcAUCa -3'
miRNA:   3'- aCUGCAa--GU------------GGGA-GGGUUGGCGU-----UAG- -5'
13951 3' -53.3 NC_003521.1 + 113173 0.78 0.553653
Target:  5'- gUGACGgg-GCCCUCCCAGgCgGCGAUCu -3'
miRNA:   3'- -ACUGCaagUGGGAGGGUU-GgCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 77926 0.68 0.959337
Target:  5'- cGGCcugCugUCUCCCGACgGCAGUUc -3'
miRNA:   3'- aCUGcaaGugGGAGGGUUGgCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 178706 0.68 0.973098
Target:  5'- uUGACGUUCACCCaggCCaaCAACCagaccuacagcuacuGCAcgCa -3'
miRNA:   3'- -ACUGCAAGUGGGa--GG--GUUGG---------------CGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 70866 0.69 0.943187
Target:  5'- cGACaagCGCUUUCUCAACCGCGAgcUCg -3'
miRNA:   3'- aCUGcaaGUGGGAGGGUUGGCGUU--AG- -5'
13951 3' -53.3 NC_003521.1 + 113441 0.7 0.923347
Target:  5'- aGACGggCACCUcgcggCCCAucuugGCCGCGAg- -3'
miRNA:   3'- aCUGCaaGUGGGa----GGGU-----UGGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 31262 0.71 0.899764
Target:  5'- cGGCGccgucgUCGCCCcaUCCCGAuCCGCAGc- -3'
miRNA:   3'- aCUGCa-----AGUGGG--AGGGUU-GGCGUUag -5'
13951 3' -53.3 NC_003521.1 + 222495 0.71 0.893293
Target:  5'- cGACugGUUcCugCggCCCAGCCGCGGUCa -3'
miRNA:   3'- aCUG--CAA-GugGgaGGGUUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 124922 0.66 0.989778
Target:  5'- cGACGccaccUUCACgCUgCCCGACCcgGUGAUCg -3'
miRNA:   3'- aCUGC-----AAGUGgGA-GGGUUGG--CGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 160776 0.66 0.98842
Target:  5'- aGGCugcCGCCCccuccUCCC-GCCGCGGUCu -3'
miRNA:   3'- aCUGcaaGUGGG-----AGGGuUGGCGUUAG- -5'
13951 3' -53.3 NC_003521.1 + 26112 0.66 0.985291
Target:  5'- cGugGUUCGCgucuCCgugUCCCAACUGUAcgCc -3'
miRNA:   3'- aCugCAAGUG----GG---AGGGUUGGCGUuaG- -5'
13951 3' -53.3 NC_003521.1 + 83598 0.67 0.979438
Target:  5'- gGACcccuGUUCACCCacugCaCCGACCGCuacccccuGUCg -3'
miRNA:   3'- aCUG----CAAGUGGGa---G-GGUUGGCGu-------UAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.