miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13952 5' -60.2 NC_003521.1 + 219473 0.66 0.821034
Target:  5'- cUCUGCUGCcuGGCGaCCgccaucaugggccugGGGcucaGCCGCCAc -3'
miRNA:   3'- aAGACGACG--CCGCaGG---------------UCC----UGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 57170 0.66 0.817732
Target:  5'- --gUGCUGCGGCGcugUCGcGACgGCCAg -3'
miRNA:   3'- aagACGACGCCGCa--GGUcCUGgUGGU- -5'
13952 5' -60.2 NC_003521.1 + 226977 0.66 0.817732
Target:  5'- ---cGCUGCcuGUGUCUGGGuCCGCCGa -3'
miRNA:   3'- aagaCGACGc-CGCAGGUCCuGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 130304 0.66 0.816903
Target:  5'- ---gGCcGCGGCGccgcgcaUCCAGGuCCACUAc -3'
miRNA:   3'- aagaCGaCGCCGC-------AGGUCCuGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 227104 0.66 0.80937
Target:  5'- -cCUGCccggcgcgGCGGCGggCgAGGACC-CCAu -3'
miRNA:   3'- aaGACGa-------CGCCGCa-GgUCCUGGuGGU- -5'
13952 5' -60.2 NC_003521.1 + 60434 0.66 0.80937
Target:  5'- gUCUGUaGCGGC-UCCAGGcguuggcgcgagGCCugCGu -3'
miRNA:   3'- aAGACGaCGCCGcAGGUCC------------UGGugGU- -5'
13952 5' -60.2 NC_003521.1 + 66590 0.66 0.80937
Target:  5'- -gCUGCcagGCGGCcUCCAcggcuuGGAUCACCu -3'
miRNA:   3'- aaGACGa--CGCCGcAGGU------CCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 101290 0.66 0.80937
Target:  5'- ---aGCUGCacgGGCGUgcccgCCAGGACgCGCCc -3'
miRNA:   3'- aagaCGACG---CCGCA-----GGUCCUG-GUGGu -5'
13952 5' -60.2 NC_003521.1 + 87760 0.66 0.80086
Target:  5'- -gCUGCggacagGUGGCGcaggCCAGGGCCAg-- -3'
miRNA:   3'- aaGACGa-----CGCCGCa---GGUCCUGGUggu -5'
13952 5' -60.2 NC_003521.1 + 188783 0.66 0.80086
Target:  5'- -gCUGCUGCu-CGUCUGGGuccCCGCCAc -3'
miRNA:   3'- aaGACGACGccGCAGGUCCu--GGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 30425 0.66 0.800001
Target:  5'- ---cGCUGCGGUcccagcugaacauGUCCAGG-CgGCCGa -3'
miRNA:   3'- aagaCGACGCCG-------------CAGGUCCuGgUGGU- -5'
13952 5' -60.2 NC_003521.1 + 140479 0.66 0.795685
Target:  5'- aUCaUGCUGCacGGCGacucggccgccaagaUCCAGGAgCGCUAu -3'
miRNA:   3'- aAG-ACGACG--CCGC---------------AGGUCCUgGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 120990 0.66 0.792208
Target:  5'- --gUGCcccugGUGGCcacgGUCCAGGGCCACa- -3'
miRNA:   3'- aagACGa----CGCCG----CAGGUCCUGGUGgu -5'
13952 5' -60.2 NC_003521.1 + 79669 0.66 0.792208
Target:  5'- -aCUGUUGCGaacgaCGUCCGcGACCGCCc -3'
miRNA:   3'- aaGACGACGCc----GCAGGUcCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 52798 0.66 0.792208
Target:  5'- ---cGgUGCGGC-UCCAccuGGACCGCCu -3'
miRNA:   3'- aagaCgACGCCGcAGGU---CCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 108950 0.66 0.792208
Target:  5'- -gCUGUcgGUGGCGUCUAuGACCACg- -3'
miRNA:   3'- aaGACGa-CGCCGCAGGUcCUGGUGgu -5'
13952 5' -60.2 NC_003521.1 + 118056 0.66 0.783424
Target:  5'- -gCUGCuucUGaCGGUGUCCGccGCCACCAu -3'
miRNA:   3'- aaGACG---AC-GCCGCAGGUccUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 73555 0.66 0.783424
Target:  5'- gUCUGCU-CGGCGUCCu--GCCGCa- -3'
miRNA:   3'- aAGACGAcGCCGCAGGuccUGGUGgu -5'
13952 5' -60.2 NC_003521.1 + 63288 0.66 0.783424
Target:  5'- gUCcGCUGgugGGCGUCguGGgcGCCGCCGg -3'
miRNA:   3'- aAGaCGACg--CCGCAGguCC--UGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 64623 0.66 0.774515
Target:  5'- cUCggGCaUGUccagGGCGcCCAGGGCCugCAg -3'
miRNA:   3'- aAGa-CG-ACG----CCGCaGGUCCUGGugGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.