Results 1 - 20 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13956 | 5' | -61.4 | NC_003521.1 | + | 25829 | 1.11 | 0.001112 |
Target: 5'- aCCUGUCCCCGCGGCCGCCUGCACAACa -3' miRNA: 3'- -GGACAGGGGCGCCGGCGGACGUGUUG- -5' |
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13956 | 5' | -61.4 | NC_003521.1 | + | 123026 | 0.71 | 0.515085 |
Target: 5'- aUCUcGUCCaagcacacgcucaaCCGCGGCUGCCUGU-CGGCg -3' miRNA: 3'- -GGA-CAGG--------------GGCGCCGGCGGACGuGUUG- -5' |
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13956 | 5' | -61.4 | NC_003521.1 | + | 16847 | 0.71 | 0.527023 |
Target: 5'- uCCUccGUCCuCCcCGGUCGCCUcgcagGCGCAGCu -3' miRNA: 3'- -GGA--CAGG-GGcGCCGGCGGA-----CGUGUUG- -5' |
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13956 | 5' | -61.4 | NC_003521.1 | + | 34744 | 0.66 | 0.805168 |
Target: 5'- cUCUGcUUCCGCGaGCUgcugGCCUGCgGCGACg -3' miRNA: 3'- -GGACaGGGGCGC-CGG----CGGACG-UGUUG- -5' |
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13956 | 5' | -61.4 | NC_003521.1 | + | 61986 | 0.76 | 0.283883 |
Target: 5'- uCCUGUaccagUCCCGCGGCUuCCgucagGCACAGCg -3' miRNA: 3'- -GGACA-----GGGGCGCCGGcGGa----CGUGUUG- -5' |
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13956 | 5' | -61.4 | NC_003521.1 | + | 60950 | 0.76 | 0.283883 |
Target: 5'- cCCggGUCCCCcgcGCGGCCGCa-GCACGAa -3' miRNA: 3'- -GGa-CAGGGG---CGCCGGCGgaCGUGUUg -5' |
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13956 | 5' | -61.4 | NC_003521.1 | + | 18353 | 0.74 | 0.330148 |
Target: 5'- uCCUccGUCCCCGCGGCCGUCgucuccagGUccgAUAACa -3' miRNA: 3'- -GGA--CAGGGGCGCCGGCGGa-------CG---UGUUG- -5' |
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13956 | 5' | -61.4 | NC_003521.1 | + | 126052 | 0.74 | 0.337194 |
Target: 5'- cCCUGggCCUCGCaGGCCGgCUGCcugaGCGACg -3' miRNA: 3'- -GGACa-GGGGCG-CCGGCgGACG----UGUUG- -5' |
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13956 | 5' | -61.4 | NC_003521.1 | + | 217467 | 0.73 | 0.381738 |
Target: 5'- aUCUGcaCCgCCGUGGCCuGCCUGgGCGGCa -3' miRNA: 3'- -GGACa-GG-GGCGCCGG-CGGACgUGUUG- -5' |
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13956 | 5' | -61.4 | NC_003521.1 | + | 45907 | 0.71 | 0.512345 |
Target: 5'- gCCgGaCCCCGCggagccggcggcgguGGCCGUCUGCGuCGGCg -3' miRNA: 3'- -GGaCaGGGGCG---------------CCGGCGGACGU-GUUG- -5' |
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13956 | 5' | -61.4 | NC_003521.1 | + | 88944 | 0.71 | 0.481742 |
Target: 5'- uUUGUCCCCGagccgGGCCGCCgGCccacCGACc -3' miRNA: 3'- gGACAGGGGCg----CCGGCGGaCGu---GUUG- -5' |
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13956 | 5' | -61.4 | NC_003521.1 | + | 117320 | 0.73 | 0.374048 |
Target: 5'- gCCgg-CUCCGCGGCCGCCUcGgGCGAa -3' miRNA: 3'- -GGacaGGGGCGCCGGCGGA-CgUGUUg -5' |
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13956 | 5' | -61.4 | NC_003521.1 | + | 74410 | 0.81 | 0.125571 |
Target: 5'- aCCUGggCCCCGUGGCgCGCCacgucguccUGCACGGCg -3' miRNA: 3'- -GGACa-GGGGCGCCG-GCGG---------ACGUGUUG- -5' |
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13956 | 5' | -61.4 | NC_003521.1 | + | 148694 | 0.71 | 0.499641 |
Target: 5'- cCCUGgagCCgCCggcGCGGCCGCCcGCACcauGGCu -3' miRNA: 3'- -GGACa--GG-GG---CGCCGGCGGaCGUG---UUG- -5' |
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13956 | 5' | -61.4 | NC_003521.1 | + | 113352 | 0.79 | 0.184181 |
Target: 5'- uCCUGcaCCCgGCGGCCGUCUGCGCcuCg -3' miRNA: 3'- -GGACa-GGGgCGCCGGCGGACGUGuuG- -5' |
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13956 | 5' | -61.4 | NC_003521.1 | + | 225016 | 0.74 | 0.358983 |
Target: 5'- aCUGccggagCCCCGacgcgcuGGCCGCCUGCGuCGGCg -3' miRNA: 3'- gGACa-----GGGGCg------CCGGCGGACGU-GUUG- -5' |
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13956 | 5' | -61.4 | NC_003521.1 | + | 114242 | 0.71 | 0.508701 |
Target: 5'- gCCgGUgCCCGgcCGGCCGCCUGC-CGu- -3' miRNA: 3'- -GGaCAgGGGC--GCCGGCGGACGuGUug -5' |
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13956 | 5' | -61.4 | NC_003521.1 | + | 135251 | 0.71 | 0.51783 |
Target: 5'- gCCUGcCCCUGCuaCCGgCUGCACAAg -3' miRNA: 3'- -GGACaGGGGCGccGGCgGACGUGUUg -5' |
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13956 | 5' | -61.4 | NC_003521.1 | + | 88806 | 0.78 | 0.188552 |
Target: 5'- cCCUG-CCCCGaggaGGCCguuucggugcGCCUGCACGGCu -3' miRNA: 3'- -GGACaGGGGCg---CCGG----------CGGACGUGUUG- -5' |
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13956 | 5' | -61.4 | NC_003521.1 | + | 149453 | 0.75 | 0.303057 |
Target: 5'- --aGUCCUCGUGGCCGCCgGUGgCGACg -3' miRNA: 3'- ggaCAGGGGCGCCGGCGGaCGU-GUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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