miRNA display CGI


Results 21 - 40 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 5' -54.4 NC_003521.1 + 222623 0.67 0.97382
Target:  5'- cGCGGccGACAUGUGaucgaagGGCcGGCAGGCg -3'
miRNA:   3'- cCGCC--UUGUACAUg------UCGcCCGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 221996 0.69 0.92272
Target:  5'- uGUaGGGCAUGUGCGGCguGGGCGGgaagcacuugGCCa -3'
miRNA:   3'- cCGcCUUGUACAUGUCG--CCCGUC----------UGG- -5'
13957 5' -54.4 NC_003521.1 + 221884 0.66 0.986248
Target:  5'- gGGUaGGGCGUGUGgGGCGGauugccggcgcGCGGcGCCa -3'
miRNA:   3'- -CCGcCUUGUACAUgUCGCC-----------CGUC-UGG- -5'
13957 5' -54.4 NC_003521.1 + 221801 0.74 0.727354
Target:  5'- cGGCGG-GCAUGggcuccguCGGCgGGGCGGGCg -3'
miRNA:   3'- -CCGCCuUGUACau------GUCG-CCCGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 221627 0.71 0.865441
Target:  5'- cGGCGGGAcCAUGUcGCuGCGcGGCcaGGugCa -3'
miRNA:   3'- -CCGCCUU-GUACA-UGuCGC-CCG--UCugG- -5'
13957 5' -54.4 NC_003521.1 + 220374 0.7 0.899448
Target:  5'- gGGCGGAcgcgACccGUACcGCuGGCGGugCa -3'
miRNA:   3'- -CCGCCU----UGuaCAUGuCGcCCGUCugG- -5'
13957 5' -54.4 NC_003521.1 + 219292 0.71 0.841816
Target:  5'- aGCGGGcccaugaaggccaGCGUGUugGGCaGGCAGuaGCCc -3'
miRNA:   3'- cCGCCU-------------UGUACAugUCGcCCGUC--UGG- -5'
13957 5' -54.4 NC_003521.1 + 218704 0.72 0.834623
Target:  5'- aGGCGGAGgAgacgGCGGCGgcGGCGGGCg -3'
miRNA:   3'- -CCGCCUUgUaca-UGUCGC--CCGUCUGg -5'
13957 5' -54.4 NC_003521.1 + 218506 0.7 0.911533
Target:  5'- aGGC-GAACcaGgcCAGCaGGCAGACCg -3'
miRNA:   3'- -CCGcCUUGuaCauGUCGcCCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 218419 0.67 0.968267
Target:  5'- cGCGcAGCAUGgcCAGCGacagcGGCGGcACCa -3'
miRNA:   3'- cCGCcUUGUACauGUCGC-----CCGUC-UGG- -5'
13957 5' -54.4 NC_003521.1 + 217503 0.66 0.980775
Target:  5'- aGGUGGccuGCAUGgccACGGUGcuGUAGACCc -3'
miRNA:   3'- -CCGCCu--UGUACa--UGUCGCc-CGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 217439 0.66 0.986248
Target:  5'- --aGGAACAcgGUGCucuccagguGCGGGaAGGCCa -3'
miRNA:   3'- ccgCCUUGUa-CAUGu--------CGCCCgUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 217115 0.69 0.937798
Target:  5'- gGGCcuGGAACAgucGUccGCcGCGGGCugcGACCu -3'
miRNA:   3'- -CCG--CCUUGUa--CA--UGuCGCCCGu--CUGG- -5'
13957 5' -54.4 NC_003521.1 + 216852 0.73 0.783304
Target:  5'- cGGCGGAcgacuguuccagGCccGUGgAGCGGGacaucCAGGCCa -3'
miRNA:   3'- -CCGCCU------------UGuaCAUgUCGCCC-----GUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 215015 0.66 0.986248
Target:  5'- aGGaGGAAgAggagACGGCGGcGCuGACCg -3'
miRNA:   3'- -CCgCCUUgUaca-UGUCGCC-CGuCUGG- -5'
13957 5' -54.4 NC_003521.1 + 214920 0.66 0.980775
Target:  5'- uGCGGAGCGUGaggauucuuaaUACcaugAGCaGGCuaaAGACCa -3'
miRNA:   3'- cCGCCUUGUAC-----------AUG----UCGcCCG---UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 212749 0.66 0.982754
Target:  5'- cGuCGGc-CAUGUGCGuGUGGGCcacGGGCCu -3'
miRNA:   3'- cC-GCCuuGUACAUGU-CGCCCG---UCUGG- -5'
13957 5' -54.4 NC_003521.1 + 212649 0.71 0.871948
Target:  5'- uGGCGGAGCAUGcaggguaucagcaUgccccagacggGCAGCGuaucccgcaGGUAGACCu -3'
miRNA:   3'- -CCGCCUUGUAC-------------A-----------UGUCGC---------CCGUCUGG- -5'
13957 5' -54.4 NC_003521.1 + 212617 0.67 0.965198
Target:  5'- gGGCGGuGCAccagcggGUGguGaUGGGCGuGACCg -3'
miRNA:   3'- -CCGCCuUGUa------CAUguC-GCCCGU-CUGG- -5'
13957 5' -54.4 NC_003521.1 + 210073 0.69 0.91724
Target:  5'- -cCGGGugAggGUACGG-GGGCAGACg -3'
miRNA:   3'- ccGCCUugUa-CAUGUCgCCCGUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.