miRNA display CGI


Results 1 - 20 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 151508 0.65 0.885177
Target:  5'- gUCGCCgucccagGCCGCGGaagaagaugaagaagGCGCcgCGGUCa -3'
miRNA:   3'- -AGCGGa------CGGCGUCaa-------------UGCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 65749 0.65 0.884521
Target:  5'- gUCGCCUGCCuggucaccucgucCAGggUGCGUUgGGUCUc -3'
miRNA:   3'- -AGCGGACGGc------------GUCa-AUGCGAgCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 106436 0.66 0.883203
Target:  5'- gUCGCUggcgaagcGCaCGCAGUaGCGCauguugagcgacuucUCGGCCa -3'
miRNA:   3'- -AGCGGa-------CG-GCGUCAaUGCG---------------AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 27319 0.66 0.880543
Target:  5'- cUCGUC-GCUGguGaaACGCuacuuUCGGCCCc -3'
miRNA:   3'- -AGCGGaCGGCguCaaUGCG-----AGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 123608 0.66 0.880543
Target:  5'- -gGCCacgGCCGCG---GCGCUgGGgCCg -3'
miRNA:   3'- agCGGa--CGGCGUcaaUGCGAgCCgGG- -5'
13965 3' -59.4 NC_003521.1 + 188056 0.66 0.880543
Target:  5'- gUUGUCgaUGCCGCGGUagagcCGCUCGucuCCCg -3'
miRNA:   3'- -AGCGG--ACGGCGUCAau---GCGAGCc--GGG- -5'
13965 3' -59.4 NC_003521.1 + 101776 0.66 0.880543
Target:  5'- gCGCCUGCUGguCGGccGCGUcUGGCCg -3'
miRNA:   3'- aGCGGACGGC--GUCaaUGCGaGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 28523 0.66 0.880543
Target:  5'- aUCGCC-GCCGU-GUUcCuCUCGGCgCCg -3'
miRNA:   3'- -AGCGGaCGGCGuCAAuGcGAGCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 145325 0.66 0.880543
Target:  5'- gUCGuCCgaGCCGCccagacGGUcaucgUGcCGCUCGGCCa -3'
miRNA:   3'- -AGC-GGa-CGGCG------UCA-----AU-GCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 204141 0.66 0.880543
Target:  5'- gCGCCggaGCC-CGGccucaGCUCGGCCg -3'
miRNA:   3'- aGCGGa--CGGcGUCaaug-CGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 112408 0.66 0.873755
Target:  5'- gCGCCgaccgGCCGCcuuucGGaccgACGCccgcucaggCGGCCCa -3'
miRNA:   3'- aGCGGa----CGGCG-----UCaa--UGCGa--------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 226075 0.66 0.873755
Target:  5'- gCGCCccgGCCGCG-----GC-CGGCCCg -3'
miRNA:   3'- aGCGGa--CGGCGUcaaugCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 233178 0.66 0.873755
Target:  5'- cCGCCguggcgGCCGCcGUUACcgUCGGUCg -3'
miRNA:   3'- aGCGGa-----CGGCGuCAAUGcgAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 148511 0.66 0.873755
Target:  5'- -gGCCcaUGCCGCGGcUGCGcCUCcuCCCg -3'
miRNA:   3'- agCGG--ACGGCGUCaAUGC-GAGccGGG- -5'
13965 3' -59.4 NC_003521.1 + 130000 0.66 0.873755
Target:  5'- gCGCCgGCgGCGGc-GCGCaaCGGCCg -3'
miRNA:   3'- aGCGGaCGgCGUCaaUGCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 109977 0.66 0.873755
Target:  5'- gCGCCUGCaGUAGggcgGCcuGC-CGGUCCa -3'
miRNA:   3'- aGCGGACGgCGUCaa--UG--CGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 46442 0.66 0.873755
Target:  5'- cCGgCgggGCUGCGGggGCuGgUCGGCCUc -3'
miRNA:   3'- aGCgGa--CGGCGUCaaUG-CgAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 113097 0.66 0.873755
Target:  5'- cCGCCgUGgUGCAGgaGCGgcuCUCGGgCCa -3'
miRNA:   3'- aGCGG-ACgGCGUCaaUGC---GAGCCgGG- -5'
13965 3' -59.4 NC_003521.1 + 66347 0.66 0.873755
Target:  5'- -gGCCcaaCGCAGggcuCGCUCGGCUg -3'
miRNA:   3'- agCGGacgGCGUCaau-GCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 137207 0.66 0.873755
Target:  5'- gUCGCgUGCCaggaacuccCAGUcACGCUgGcGCCCc -3'
miRNA:   3'- -AGCGgACGGc--------GUCAaUGCGAgC-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.