miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 3' -54.3 NC_003521.1 + 159828 0.74 0.676151
Target:  5'- gGCcgUgaggCGCUGCGCGg-AGGCGCGAGc -3'
miRNA:   3'- -CGuaGa---GCGACGCGUagUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 156881 0.72 0.809087
Target:  5'- gGCGUCgCGCa--GCAcCAGGCGCGAGa -3'
miRNA:   3'- -CGUAGaGCGacgCGUaGUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 154926 0.67 0.959259
Target:  5'- aGCGUCUCGCUGCcgGCcUC-GGCcaGCGGc -3'
miRNA:   3'- -CGUAGAGCGACG--CGuAGuUCG--CGCUc -5'
13966 3' -54.3 NC_003521.1 + 153982 0.77 0.544733
Target:  5'- gGCAUCgugcCGCUgguggacGCGCGUCccaagGAGCGCGAGg -3'
miRNA:   3'- -CGUAGa---GCGA-------CGCGUAG-----UUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 153517 0.66 0.979323
Target:  5'- gGCG-CUCGCUGCGCAccuUCuugaacacGCGCa-- -3'
miRNA:   3'- -CGUaGAGCGACGCGU---AGuu------CGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 152260 0.7 0.865587
Target:  5'- uGCAcuUCUCGCUGUGCAccauccucUCGuGCGUaGAGa -3'
miRNA:   3'- -CGU--AGAGCGACGCGU--------AGUuCGCG-CUC- -5'
13966 3' -54.3 NC_003521.1 + 150903 0.67 0.960674
Target:  5'- gGCGUCaUCGaCUGCGCGcccuUCcacggcgugugggccGAGCGCGGu -3'
miRNA:   3'- -CGUAG-AGC-GACGCGU----AG---------------UUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 149895 0.66 0.977032
Target:  5'- aGCAcCUCGCcgGCgGCGUCcAGCGCc-- -3'
miRNA:   3'- -CGUaGAGCGa-CG-CGUAGuUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 145303 0.66 0.982821
Target:  5'- uCAUCgugcCGCUcggccacgcgaccaGCGCGUCGGcgaugucggcGCGCGAGg -3'
miRNA:   3'- cGUAGa---GCGA--------------CGCGUAGUU----------CGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 145299 0.71 0.842474
Target:  5'- gGCGUCUCGCcGgGCAUCcaguucggccugAAGCaCGAGg -3'
miRNA:   3'- -CGUAGAGCGaCgCGUAG------------UUCGcGCUC- -5'
13966 3' -54.3 NC_003521.1 + 144291 0.67 0.959259
Target:  5'- gGCGaCUCGCUGCuGCcgCAcGCGCu-- -3'
miRNA:   3'- -CGUaGAGCGACG-CGuaGUuCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 144083 0.67 0.971902
Target:  5'- cGCAcgaUCUCGCUGgGguU---GCGCGGGu -3'
miRNA:   3'- -CGU---AGAGCGACgCguAguuCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 143746 0.76 0.575472
Target:  5'- cCGUCUCGCUGUGC-UUgcGCGCGAu -3'
miRNA:   3'- cGUAGAGCGACGCGuAGuuCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 140372 0.68 0.938577
Target:  5'- gGCGg--CGCUGUGUcgCAAGCGCu-- -3'
miRNA:   3'- -CGUagaGCGACGCGuaGUUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 137928 0.69 0.917898
Target:  5'- cGgAUCUCGUcGCGCAc--GGCGCGAa -3'
miRNA:   3'- -CgUAGAGCGaCGCGUaguUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 136449 0.66 0.975572
Target:  5'- ---aCUCG-UGCGuCAUCAaggucagccgcaagaAGCGCGAGg -3'
miRNA:   3'- cguaGAGCgACGC-GUAGU---------------UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 136089 0.66 0.974561
Target:  5'- cGCuggagggCUCGgUGUGCGUCAAGaCGgGAc -3'
miRNA:   3'- -CGua-----GAGCgACGCGUAGUUC-GCgCUc -5'
13966 3' -54.3 NC_003521.1 + 130047 0.66 0.977032
Target:  5'- gGCcUCggcgCGCacgUGCGCGggaCAGGCGCGGu -3'
miRNA:   3'- -CGuAGa---GCG---ACGCGUa--GUUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 129693 0.67 0.962732
Target:  5'- --uUCgaggCGCUGCGCAUCuacuacGGCGaCGAc -3'
miRNA:   3'- cguAGa---GCGACGCGUAGu-----UCGC-GCUc -5'
13966 3' -54.3 NC_003521.1 + 128999 0.66 0.974561
Target:  5'- aGCGUCUgcaagaaGCUGUGgAUCAGGcCGCGc- -3'
miRNA:   3'- -CGUAGAg------CGACGCgUAGUUC-GCGCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.