miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13966 3' -54.3 NC_003521.1 + 83956 0.69 0.928185
Target:  5'- cGCccgCUCGC-GCGUccacaacGUCAcGCGCGAGg -3'
miRNA:   3'- -CGua-GAGCGaCGCG-------UAGUuCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 53347 0.69 0.923417
Target:  5'- uCGUCUCGaauggcCUGCGCAacuUCGcgccccuGCGCGAGg -3'
miRNA:   3'- cGUAGAGC------GACGCGU---AGUu------CGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 198514 0.71 0.825288
Target:  5'- gGCua-UCGCUGCgGCGUCAgccagcuauugauAGCGCGAc -3'
miRNA:   3'- -CGuagAGCGACG-CGUAGU-------------UCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 77396 0.73 0.754493
Target:  5'- -gGUCUCGCaGCGCAagGccguGCGCGAGu -3'
miRNA:   3'- cgUAGAGCGaCGCGUagUu---CGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 35904 0.67 0.95557
Target:  5'- uGCcgCUCGCaGCGCGUgCGGGaccuGCGAa -3'
miRNA:   3'- -CGuaGAGCGaCGCGUA-GUUCg---CGCUc -5'
13966 3' -54.3 NC_003521.1 + 140372 0.68 0.938577
Target:  5'- gGCGg--CGCUGUGUcgCAAGCGCu-- -3'
miRNA:   3'- -CGUagaGCGACGCGuaGUUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 226177 0.69 0.917898
Target:  5'- gGUGUUcCGUcaccgGCGCuUCGAGCGCGAGc -3'
miRNA:   3'- -CGUAGaGCGa----CGCGuAGUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 58941 0.74 0.70603
Target:  5'- gGCAUgacCUCGCUGCucaccuGCGUCAuGCGCGGc -3'
miRNA:   3'- -CGUA---GAGCGACG------CGUAGUuCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 225873 0.68 0.938577
Target:  5'- aCAUCgugggGCUGCagGCGgcCGAGCGCGAGg -3'
miRNA:   3'- cGUAGag---CGACG--CGUa-GUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 143746 0.76 0.575472
Target:  5'- cCGUCUCGCUGUGC-UUgcGCGCGAu -3'
miRNA:   3'- cGUAGAGCGACGCGuAGuuCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 137928 0.69 0.917898
Target:  5'- cGgAUCUCGUcGCGCAc--GGCGCGAa -3'
miRNA:   3'- -CgUAGAGCGaCGCGUaguUCGCGCUc -5'
13966 3' -54.3 NC_003521.1 + 75112 0.68 0.933756
Target:  5'- uGCAggUCG-UGCaGCGUgAGGCGCGGGa -3'
miRNA:   3'- -CGUagAGCgACG-CGUAgUUCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 152260 0.7 0.865587
Target:  5'- uGCAcuUCUCGCUGUGCAccauccucUCGuGCGUaGAGa -3'
miRNA:   3'- -CGU--AGAGCGACGCGU--------AGUuCGCG-CUC- -5'
13966 3' -54.3 NC_003521.1 + 221619 0.71 0.826124
Target:  5'- cCAUgUCGCUGCGCGgcCAGGUGCa-- -3'
miRNA:   3'- cGUAgAGCGACGCGUa-GUUCGCGcuc -5'
13966 3' -54.3 NC_003521.1 + 196032 0.72 0.791426
Target:  5'- cGCcgCUCGUgccaggcaacGCGCGUCcuGCGUGAGg -3'
miRNA:   3'- -CGuaGAGCGa---------CGCGUAGuuCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 121486 0.72 0.773205
Target:  5'- aCAUCUUccuggaGCUGCGCGcCcuGCGCGAGa -3'
miRNA:   3'- cGUAGAG------CGACGCGUaGuuCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 200687 0.67 0.962732
Target:  5'- cGCGUgUCGCU-UGCcgCGGGCGUGcAGg -3'
miRNA:   3'- -CGUAgAGCGAcGCGuaGUUCGCGC-UC- -5'
13966 3' -54.3 NC_003521.1 + 35179 0.67 0.959259
Target:  5'- cGCcgCUaccUGCUGCGCuUCGAGgGCGc- -3'
miRNA:   3'- -CGuaGA---GCGACGCGuAGUUCgCGCuc -5'
13966 3' -54.3 NC_003521.1 + 195363 0.68 0.947102
Target:  5'- gGCGUCU-GCgggacGCGgGUCAggccggguuuuguAGCGCGAGa -3'
miRNA:   3'- -CGUAGAgCGa----CGCgUAGU-------------UCGCGCUC- -5'
13966 3' -54.3 NC_003521.1 + 30594 0.68 0.943167
Target:  5'- cGCcgaCUCGCUgGCGCAguugcUgGAGCGCGGu -3'
miRNA:   3'- -CGua-GAGCGA-CGCGU-----AgUUCGCGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.