miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13967 3' -52.5 NC_003521.1 + 234113 0.66 0.995177
Target:  5'- cCUGCACcacggcgagacCCAGCA-GCGcUCGCGGGCGc -3'
miRNA:   3'- -GACGUGc----------GGUCGUaUGC-AGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 43562 0.66 0.995177
Target:  5'- -cGC-CGCCGGCGccGCGUCAagcaccgcuccuCGGGCGg -3'
miRNA:   3'- gaCGuGCGGUCGUa-UGCAGU------------GCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 112052 0.66 0.995177
Target:  5'- aCUGCgACGCCuGCuggaggACGcCGCGGugGg -3'
miRNA:   3'- -GACG-UGCGGuCGua----UGCaGUGCUugU- -5'
13967 3' -52.5 NC_003521.1 + 103124 0.66 0.995177
Target:  5'- -cGCACGgcCCAGaCcUACGcCACGGGCGc -3'
miRNA:   3'- gaCGUGC--GGUC-GuAUGCaGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 26551 0.66 0.995177
Target:  5'- -cGCuuuAUGCCAGCGacgGCGUCA-GGGCGa -3'
miRNA:   3'- gaCG---UGCGGUCGUa--UGCAGUgCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 220276 0.66 0.995177
Target:  5'- uUGCugGggugcucguugcCCAGCGUAUagGcCACGAACAu -3'
miRNA:   3'- gACGugC------------GGUCGUAUG--CaGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 192960 0.66 0.995177
Target:  5'- gCUGCcCuCCAGCAUGC-UCGCGAc-- -3'
miRNA:   3'- -GACGuGcGGUCGUAUGcAGUGCUugu -5'
13967 3' -52.5 NC_003521.1 + 207056 0.66 0.995177
Target:  5'- -cGCAgGCCGGag-GCGUUGCaGGGCAg -3'
miRNA:   3'- gaCGUgCGGUCguaUGCAGUG-CUUGU- -5'
13967 3' -52.5 NC_003521.1 + 154144 0.66 0.995177
Target:  5'- -cGCGCGCUGGacgACGaggaUCugGAGCAg -3'
miRNA:   3'- gaCGUGCGGUCguaUGC----AGugCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 71826 0.66 0.995105
Target:  5'- aCUGUACGCCaaaaaggcGGCGU-CGUCuucggcgGCGGGCu -3'
miRNA:   3'- -GACGUGCGG--------UCGUAuGCAG-------UGCUUGu -5'
13967 3' -52.5 NC_003521.1 + 130476 0.66 0.994418
Target:  5'- gUGCugGcCCAGC-UACacCGCGAGCGc -3'
miRNA:   3'- gACGugC-GGUCGuAUGcaGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 129917 0.66 0.994418
Target:  5'- -cGCGCGCCuGCug----CGCGAACAc -3'
miRNA:   3'- gaCGUGCGGuCGuaugcaGUGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 84679 0.66 0.994418
Target:  5'- -aGCAgCGCCAGCAgcUGCGUgCACa---- -3'
miRNA:   3'- gaCGU-GCGGUCGU--AUGCA-GUGcuugu -5'
13967 3' -52.5 NC_003521.1 + 104317 0.66 0.994418
Target:  5'- gUGCugGCgCAGacgGCGUCG-GAGCAc -3'
miRNA:   3'- gACGugCG-GUCguaUGCAGUgCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 146235 0.66 0.994418
Target:  5'- -aGCGCGCCAGCucauagAUGUUgagGCGGcccaGCAg -3'
miRNA:   3'- gaCGUGCGGUCGua----UGCAG---UGCU----UGU- -5'
13967 3' -52.5 NC_003521.1 + 235166 0.66 0.994418
Target:  5'- -aGCGCGaUUGGCGUcGCGUCAUGGugGa -3'
miRNA:   3'- gaCGUGC-GGUCGUA-UGCAGUGCUugU- -5'
13967 3' -52.5 NC_003521.1 + 150263 0.66 0.994418
Target:  5'- cCUGCACcgcgGCCGGCcucucguggGUGCuGUCGCGGGg- -3'
miRNA:   3'- -GACGUG----CGGUCG---------UAUG-CAGUGCUUgu -5'
13967 3' -52.5 NC_003521.1 + 150913 0.66 0.994337
Target:  5'- aCUGCGCGCCcuuccacGGCGUGUGggcCGAGCGc -3'
miRNA:   3'- -GACGUGCGG-------UCGUAUGCaguGCUUGU- -5'
13967 3' -52.5 NC_003521.1 + 43231 0.66 0.993565
Target:  5'- gUGgGCGCCGGCGggucGCGcUCGCuGGGCu -3'
miRNA:   3'- gACgUGCGGUCGUa---UGC-AGUG-CUUGu -5'
13967 3' -52.5 NC_003521.1 + 204436 0.66 0.993565
Target:  5'- gCUGC-CGCCAGCAg----CACGGAa- -3'
miRNA:   3'- -GACGuGCGGUCGUaugcaGUGCUUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.