Results 1 - 20 of 77 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13969 | 3' | -54.8 | NC_003521.1 | + | 161985 | 0.66 | 0.973843 |
Target: 5'- -----aCCUUCGGCugGUGCuCCGu- -3' miRNA: 3'- uguucaGGAAGCCGugCGCGuGGUua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 167193 | 0.66 | 0.973843 |
Target: 5'- -gGAGgCCUUCugcuugggcuGGCAgGCGCGCCGc- -3' miRNA: 3'- ugUUCaGGAAG----------CCGUgCGCGUGGUua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 203679 | 0.66 | 0.973843 |
Target: 5'- aGCAGGUagaagcagaagCCgcgCGGCAuguUGCGCGCCGu- -3' miRNA: 3'- -UGUUCA-----------GGaa-GCCGU---GCGCGUGGUua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 18763 | 0.66 | 0.973843 |
Target: 5'- gACGGGUCgCUgcugcgaCGGCugGUGCcccccGCCGAUa -3' miRNA: 3'- -UGUUCAG-GAa------GCCGugCGCG-----UGGUUA- -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 212090 | 0.66 | 0.971114 |
Target: 5'- cGCGcGUCUgguugUCGGCGUGCGcCACCAu- -3' miRNA: 3'- -UGUuCAGGa----AGCCGUGCGC-GUGGUua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 24876 | 0.66 | 0.968186 |
Target: 5'- aGCAGGUCCUcaUGGUGCGCuaccuCACCAu- -3' miRNA: 3'- -UGUUCAGGAa-GCCGUGCGc----GUGGUua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 62343 | 0.66 | 0.968186 |
Target: 5'- gACucGUCCUUCGGCAgcacgGUGCACg--- -3' miRNA: 3'- -UGuuCAGGAAGCCGUg----CGCGUGguua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 222178 | 0.66 | 0.967268 |
Target: 5'- aGCAGGUCCgugCGGCcccACGCcacguuguuauuagGCACCu-- -3' miRNA: 3'- -UGUUCAGGaa-GCCG---UGCG--------------CGUGGuua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 65358 | 0.66 | 0.965054 |
Target: 5'- gACGugcuGUCCggggagaCGGCGCGC-CGCCGAUc -3' miRNA: 3'- -UGUu---CAGGaa-----GCCGUGCGcGUGGUUA- -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 153396 | 0.66 | 0.965054 |
Target: 5'- cGCAGGaucUCC-UCGuGCAgGUGCGCCAc- -3' miRNA: 3'- -UGUUC---AGGaAGC-CGUgCGCGUGGUua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 37412 | 0.66 | 0.965054 |
Target: 5'- cACGGG-CCUgaccgugUGGCGCG-GCGCCGAg -3' miRNA: 3'- -UGUUCaGGAa------GCCGUGCgCGUGGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 187626 | 0.66 | 0.965054 |
Target: 5'- gGCGAG-CCg--GGC-CGCGCGCCGc- -3' miRNA: 3'- -UGUUCaGGaagCCGuGCGCGUGGUua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 97480 | 0.66 | 0.961711 |
Target: 5'- ---cGUCCUUgGGCACGUagACCAGg -3' miRNA: 3'- uguuCAGGAAgCCGUGCGcgUGGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 179528 | 0.66 | 0.958153 |
Target: 5'- uGCAuGUCCUUggacaGGUGCGCGCggcucagcGCCAAg -3' miRNA: 3'- -UGUuCAGGAAg----CCGUGCGCG--------UGGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 215931 | 0.66 | 0.958153 |
Target: 5'- ---cGUCCcgCGGCAUggugagguaGCGCACCAu- -3' miRNA: 3'- uguuCAGGaaGCCGUG---------CGCGUGGUua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 117386 | 0.67 | 0.954374 |
Target: 5'- uGCAGGUg---CGGCACGCGCugUg-- -3' miRNA: 3'- -UGUUCAggaaGCCGUGCGCGugGuua -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 19219 | 0.67 | 0.950372 |
Target: 5'- uGCGAccuggCUUUCGGCuCGCGCACgCAAa -3' miRNA: 3'- -UGUUca---GGAAGCCGuGCGCGUG-GUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 2872 | 0.67 | 0.950372 |
Target: 5'- gACGAGUCCaUCugGGUAuUGgGCACCAGUc -3' miRNA: 3'- -UGUUCAGGaAG--CCGU-GCgCGUGGUUA- -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 101893 | 0.67 | 0.950372 |
Target: 5'- --uGGUCCaUCuuguacauguagGGCAgGCGCACCGAg -3' miRNA: 3'- uguUCAGGaAG------------CCGUgCGCGUGGUUa -5' |
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13969 | 3' | -54.8 | NC_003521.1 | + | 30442 | 0.67 | 0.949127 |
Target: 5'- aACAuGUCCaggCGGCcgagggugccgaugACGCGCACCu-- -3' miRNA: 3'- -UGUuCAGGaa-GCCG--------------UGCGCGUGGuua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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