miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13969 3' -54.8 NC_003521.1 + 161985 0.66 0.973843
Target:  5'- -----aCCUUCGGCugGUGCuCCGu- -3'
miRNA:   3'- uguucaGGAAGCCGugCGCGuGGUua -5'
13969 3' -54.8 NC_003521.1 + 155332 0.72 0.740315
Target:  5'- cGCGGGUCCcggcgggGGCGCGgGCACCGGc -3'
miRNA:   3'- -UGUUCAGGaag----CCGUGCgCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 153396 0.66 0.965054
Target:  5'- cGCAGGaucUCC-UCGuGCAgGUGCGCCAc- -3'
miRNA:   3'- -UGUUC---AGGaAGC-CGUgCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 149535 0.69 0.897564
Target:  5'- uCGAGUCgggCGGCGCGCGCuCCu-- -3'
miRNA:   3'- uGUUCAGgaaGCCGUGCGCGuGGuua -5'
13969 3' -54.8 NC_003521.1 + 149172 0.74 0.650615
Target:  5'- ---cGUCCgucUCGGCGCGCGuCGCCAc- -3'
miRNA:   3'- uguuCAGGa--AGCCGUGCGC-GUGGUua -5'
13969 3' -54.8 NC_003521.1 + 145258 0.69 0.896918
Target:  5'- uGCAGGgcgCCUccucggccUCGGCGgccagcuCGCGCGCCGGc -3'
miRNA:   3'- -UGUUCa--GGA--------AGCCGU-------GCGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 143524 0.68 0.926897
Target:  5'- uCGGG-CCUgaUCcGCACGCGCGCCGc- -3'
miRNA:   3'- uGUUCaGGA--AGcCGUGCGCGUGGUua -5'
13969 3' -54.8 NC_003521.1 + 142717 0.67 0.936987
Target:  5'- cGCGAGUCC-UCGGaCAUGUGguCCu-- -3'
miRNA:   3'- -UGUUCAGGaAGCC-GUGCGCguGGuua -5'
13969 3' -54.8 NC_003521.1 + 141141 0.76 0.529971
Target:  5'- cCGAGaCCUUCGGCAacccCGUGCACCGGg -3'
miRNA:   3'- uGUUCaGGAAGCCGU----GCGCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 140732 0.69 0.890337
Target:  5'- cGCGAGUCCUcgUCGGCggucgagGCGCcCGCCu-- -3'
miRNA:   3'- -UGUUCAGGA--AGCCG-------UGCGcGUGGuua -5'
13969 3' -54.8 NC_003521.1 + 139584 0.7 0.854939
Target:  5'- cCAGGUCUUgccgUGGCGcCGCGgCACCAGg -3'
miRNA:   3'- uGUUCAGGAa---GCCGU-GCGC-GUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 138692 0.69 0.870001
Target:  5'- gACAAGgccgugagCCUgggCGGCACGgGCGCUGGc -3'
miRNA:   3'- -UGUUCa-------GGAa--GCCGUGCgCGUGGUUa -5'
13969 3' -54.8 NC_003521.1 + 133370 0.69 0.884222
Target:  5'- aGCAcGGUCCgcCGGCACaGCGCGgCGGUc -3'
miRNA:   3'- -UGU-UCAGGaaGCCGUG-CGCGUgGUUA- -5'
13969 3' -54.8 NC_003521.1 + 131473 0.68 0.909996
Target:  5'- gACGAGUCCUucUCGGCGCugacCGUGuCCGAa -3'
miRNA:   3'- -UGUUCAGGA--AGCCGUGc---GCGU-GGUUa -5'
13969 3' -54.8 NC_003521.1 + 130459 0.68 0.93206
Target:  5'- cCGAGUUUUUCGGuCGCGUGCuggcCCAGc -3'
miRNA:   3'- uGUUCAGGAAGCC-GUGCGCGu---GGUUa -5'
13969 3' -54.8 NC_003521.1 + 130299 0.68 0.93206
Target:  5'- gGCGAGgCCg-CGGCGcCGCGCAuCCAGg -3'
miRNA:   3'- -UGUUCaGGaaGCCGU-GCGCGU-GGUUa -5'
13969 3' -54.8 NC_003521.1 + 126161 0.71 0.77815
Target:  5'- aACAGGUCCU---GCACGCGCACg--- -3'
miRNA:   3'- -UGUUCAGGAagcCGUGCGCGUGguua -5'
13969 3' -54.8 NC_003521.1 + 124940 0.7 0.847107
Target:  5'- uACAgcAGUCCgugggUgGGCACGUGCAgCAGg -3'
miRNA:   3'- -UGU--UCAGGa----AgCCGUGCGCGUgGUUa -5'
13969 3' -54.8 NC_003521.1 + 123084 0.7 0.847107
Target:  5'- cACAGcUCgUagGGCACGCGCACCu-- -3'
miRNA:   3'- -UGUUcAGgAagCCGUGCGCGUGGuua -5'
13969 3' -54.8 NC_003521.1 + 122656 0.68 0.934059
Target:  5'- aGCAGGUCCUggagcgcgaucgaGGCGCccaGCACCGAc -3'
miRNA:   3'- -UGUUCAGGAag-----------CCGUGcg-CGUGGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.