miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13972 3' -55.2 NC_003521.1 + 187263 0.69 0.91639
Target:  5'- -gGGAGAGCUagaGAgacGCGAC-AGCGGc -3'
miRNA:   3'- uaCCUCUCGAg--CUac-UGCUGcUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 186920 0.74 0.687865
Target:  5'- -aGGGGGGCgcCGGUGGCGG-GGGCGGc -3'
miRNA:   3'- uaCCUCUCGa-GCUACUGCUgCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 186777 0.73 0.736259
Target:  5'- -cGGAGgcGGCggUGGUGGCGGCG-GCGGg -3'
miRNA:   3'- uaCCUC--UCGa-GCUACUGCUGCuCGCC- -5'
13972 3' -55.2 NC_003521.1 + 181881 0.69 0.91639
Target:  5'- -cGGcGAGCUCGccGAUGACGuucGUGGu -3'
miRNA:   3'- uaCCuCUCGAGCuaCUGCUGCu--CGCC- -5'
13972 3' -55.2 NC_003521.1 + 177919 0.68 0.9322
Target:  5'- -gGGAGGGCgucgUCGGgaggGAUGGgGAGUGGc -3'
miRNA:   3'- uaCCUCUCG----AGCUa---CUGCUgCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 169294 0.72 0.773487
Target:  5'- -cGGcGGGCUCGGUGACGuCGGcCGGc -3'
miRNA:   3'- uaCCuCUCGAGCUACUGCuGCUcGCC- -5'
13972 3' -55.2 NC_003521.1 + 168479 0.67 0.96459
Target:  5'- cUGGucAGgUCGAUcaugGGCGGCGAGaCGGa -3'
miRNA:   3'- uACCucUCgAGCUA----CUGCUGCUC-GCC- -5'
13972 3' -55.2 NC_003521.1 + 167665 0.67 0.956692
Target:  5'- -aGGAGAggagugacgugcucGCgguugCGGUGACGACGcucguggaggaGGCGGc -3'
miRNA:   3'- uaCCUCU--------------CGa----GCUACUGCUGC-----------UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 167438 0.72 0.782517
Target:  5'- gGUGGAuGAaCUCGGacaUGACGAUGAGCGu -3'
miRNA:   3'- -UACCU-CUcGAGCU---ACUGCUGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 166229 0.7 0.864539
Target:  5'- cUGGuagaAGAGCgUGAUGccgccCGGCGAGCGGg -3'
miRNA:   3'- uACC----UCUCGaGCUACu----GCUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 164750 0.66 0.973296
Target:  5'- -aGGGGGGCaUCGcgGuCGcCGGGCGa -3'
miRNA:   3'- uaCCUCUCG-AGCuaCuGCuGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 162223 0.7 0.871758
Target:  5'- -cGGGGGGUgguagCGccGACGGCGcuGGCGGg -3'
miRNA:   3'- uaCCUCUCGa----GCuaCUGCUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 161223 0.73 0.726717
Target:  5'- -cGGcaAGUUCGAUGGCGGCGgcAGCGGc -3'
miRNA:   3'- uaCCucUCGAGCUACUGCUGC--UCGCC- -5'
13972 3' -55.2 NC_003521.1 + 153391 0.69 0.898564
Target:  5'- gGUGGGGGGCUgGAUGggaaagGCGACGAuccccuggGCGu -3'
miRNA:   3'- -UACCUCUCGAgCUAC------UGCUGCU--------CGCc -5'
13972 3' -55.2 NC_003521.1 + 150771 0.69 0.904728
Target:  5'- cGUGu-GcGCUCGcgcGACGACGGGCGGg -3'
miRNA:   3'- -UACcuCuCGAGCua-CUGCUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 150553 0.69 0.892181
Target:  5'- gGUGGuGGuGCgggUGGUGGCGGCG-GCGGc -3'
miRNA:   3'- -UACCuCU-CGa--GCUACUGCUGCuCGCC- -5'
13972 3' -55.2 NC_003521.1 + 150440 0.66 0.971693
Target:  5'- -aGGAGAGCgcgccCGggGuccuccuggucugggGCGGCGAGCGc -3'
miRNA:   3'- uaCCUCUCGa----GCuaC---------------UGCUGCUCGCc -5'
13972 3' -55.2 NC_003521.1 + 149703 0.7 0.867451
Target:  5'- gGUGGAGcccugugagcucucGCUCGGcgugcccGACGACGAGUGGc -3'
miRNA:   3'- -UACCUCu-------------CGAGCUa------CUGCUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 148483 0.69 0.904728
Target:  5'- -cGGAGGGUUCcggGAgcgaGGCGGGCGGa -3'
miRNA:   3'- uaCCUCUCGAGcuaCUg---CUGCUCGCC- -5'
13972 3' -55.2 NC_003521.1 + 148439 0.67 0.961291
Target:  5'- -aGGAGccGGCggagCGAcGGCagcgGGCGAGCGGa -3'
miRNA:   3'- uaCCUC--UCGa---GCUaCUG----CUGCUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.