Results 21 - 40 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13972 | 3' | -55.2 | NC_003521.1 | + | 153391 | 0.69 | 0.898564 |
Target: 5'- gGUGGGGGGCUgGAUGggaaagGCGACGAuccccuggGCGu -3' miRNA: 3'- -UACCUCUCGAgCUAC------UGCUGCU--------CGCc -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 36802 | 0.7 | 0.878775 |
Target: 5'- -cGGAGccGCUCGcgGACGGCGGacuCGGg -3' miRNA: 3'- uaCCUCu-CGAGCuaCUGCUGCUc--GCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 187901 | 0.71 | 0.799316 |
Target: 5'- gGUGGAcaaucgcGAG-UCGAUGACGACGuGCGu -3' miRNA: 3'- -UACCU-------CUCgAGCUACUGCUGCuCGCc -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 98624 | 0.73 | 0.726717 |
Target: 5'- -aGGAGGGCgagagCGgcGGCGGCGguAGCGGc -3' miRNA: 3'- uaCCUCUCGa----GCuaCUGCUGC--UCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 91188 | 0.67 | 0.950135 |
Target: 5'- -aGGAGAGCaccUCGccGGCGGCGuccAGCGc -3' miRNA: 3'- uaCCUCUCG---AGCuaCUGCUGC---UCGCc -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 76339 | 0.69 | 0.91639 |
Target: 5'- -cGGAG-GCgaCGGUGACGGCugcGGCGGc -3' miRNA: 3'- uaCCUCuCGa-GCUACUGCUGc--UCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 113851 | 0.7 | 0.857122 |
Target: 5'- -cGGGGcGGC-CGgcGACGACGGcGCGGg -3' miRNA: 3'- uaCCUC-UCGaGCuaCUGCUGCU-CGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 186920 | 0.74 | 0.687865 |
Target: 5'- -aGGGGGGCgcCGGUGGCGG-GGGCGGc -3' miRNA: 3'- uaCCUCUCGa-GCUACUGCUgCUCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 7733 | 0.69 | 0.91639 |
Target: 5'- -gGGAGGGCggcgCGA--GCGGCGgaGGCGGc -3' miRNA: 3'- uaCCUCUCGa---GCUacUGCUGC--UCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 100569 | 0.79 | 0.387557 |
Target: 5'- -aGGAGGGCaCGAggagGACGACGAcGCGGa -3' miRNA: 3'- uaCCUCUCGaGCUa---CUGCUGCU-CGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 162223 | 0.7 | 0.871758 |
Target: 5'- -cGGGGGGUgguagCGccGACGGCGcuGGCGGg -3' miRNA: 3'- uaCCUCUCGa----GCuaCUGCUGC--UCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 148483 | 0.69 | 0.904728 |
Target: 5'- -cGGAGGGUUCcggGAgcgaGGCGGGCGGa -3' miRNA: 3'- uaCCUCUCGAGcuaCUg---CUGCUCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 80951 | 0.71 | 0.841719 |
Target: 5'- -aGGAG-GC-CGAUGACGACGAugaGGa -3' miRNA: 3'- uaCCUCuCGaGCUACUGCUGCUcg-CC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 89917 | 0.71 | 0.800187 |
Target: 5'- cGUGGaAGGGCgcgcagUCGAUGACGccgGCGuGCGGc -3' miRNA: 3'- -UACC-UCUCG------AGCUACUGC---UGCuCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 169294 | 0.72 | 0.773487 |
Target: 5'- -cGGcGGGCUCGGUGACGuCGGcCGGc -3' miRNA: 3'- uaCCuCUCGAGCUACUGCuGCUcGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 161223 | 0.73 | 0.726717 |
Target: 5'- -cGGcaAGUUCGAUGGCGGCGgcAGCGGc -3' miRNA: 3'- uaCCucUCGAGCUACUGCUGC--UCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 210531 | 0.67 | 0.961291 |
Target: 5'- cUGaAGAGCuacuUCGAcGACGugGAGCGc -3' miRNA: 3'- uACcUCUCG----AGCUaCUGCugCUCGCc -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 6510 | 0.67 | 0.950135 |
Target: 5'- -cGGcAGAgGCUcacCGGUGACGA-GGGCGGu -3' miRNA: 3'- uaCC-UCU-CGA---GCUACUGCUgCUCGCC- -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 108290 | 0.68 | 0.937019 |
Target: 5'- --cGAGGGCggugguggCGGUGACGACGAcGUGa -3' miRNA: 3'- uacCUCUCGa-------GCUACUGCUGCU-CGCc -5' |
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13972 | 3' | -55.2 | NC_003521.1 | + | 187263 | 0.69 | 0.91639 |
Target: 5'- -gGGAGAGCUagaGAgacGCGAC-AGCGGc -3' miRNA: 3'- uaCCUCUCGAg--CUac-UGCUGcUCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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