miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13972 5' -55.4 NC_003521.1 + 76268 0.66 0.968945
Target:  5'- --gCGCacgGCCGCCUGCGAG-ACCUc -3'
miRNA:   3'- uagGCGag-UGGUGGAUGCUCaUGGAc -5'
13972 5' -55.4 NC_003521.1 + 62581 0.66 0.968945
Target:  5'- --aCGC-CGCCGCCUACcAGUGCgaGa -3'
miRNA:   3'- uagGCGaGUGGUGGAUGcUCAUGgaC- -5'
13972 5' -55.4 NC_003521.1 + 9216 0.66 0.968945
Target:  5'- -aCCaGC-CACCACCUugGAG-AUUUGg -3'
miRNA:   3'- uaGG-CGaGUGGUGGAugCUCaUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 121813 0.66 0.968945
Target:  5'- aAUCCGUguUCGCCGCCUuCGAGgagAgCUc -3'
miRNA:   3'- -UAGGCG--AGUGGUGGAuGCUCa--UgGAc -5'
13972 5' -55.4 NC_003521.1 + 209849 0.66 0.965897
Target:  5'- gAUCCGCagCugCugCUGCgugccGAGcGCCUGg -3'
miRNA:   3'- -UAGGCGa-GugGugGAUG-----CUCaUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 175690 0.66 0.965897
Target:  5'- gGUCCGCUugCGCCAUCUGuCG-GUACUc- -3'
miRNA:   3'- -UAGGCGA--GUGGUGGAU-GCuCAUGGac -5'
13972 5' -55.4 NC_003521.1 + 21551 0.66 0.965897
Target:  5'- -cCCGCUCauguGCCAgccCCUGCGGGc-CCUGc -3'
miRNA:   3'- uaGGCGAG----UGGU---GGAUGCUCauGGAC- -5'
13972 5' -55.4 NC_003521.1 + 132323 0.66 0.965897
Target:  5'- -cCCGCgug-CGCCUGCGGGUGCUa- -3'
miRNA:   3'- uaGGCGagugGUGGAUGCUCAUGGac -5'
13972 5' -55.4 NC_003521.1 + 11776 0.66 0.965897
Target:  5'- -aCgGCUCAUCugCUGCGAGgagucCCUc -3'
miRNA:   3'- uaGgCGAGUGGugGAUGCUCau---GGAc -5'
13972 5' -55.4 NC_003521.1 + 174462 0.66 0.965897
Target:  5'- -gCUGCUCGCCGCCggccACGcgagcgggauccAGUugCUGc -3'
miRNA:   3'- uaGGCGAGUGGUGGa---UGC------------UCAugGAC- -5'
13972 5' -55.4 NC_003521.1 + 1155 0.66 0.962644
Target:  5'- cGUCCccgggaGCcacggCGCCGCCUACGGGacuggacgGCCUGu -3'
miRNA:   3'- -UAGG------CGa----GUGGUGGAUGCUCa-------UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 18466 0.66 0.962644
Target:  5'- -aCCGCgggCugCGCg-GCGAGUgucGCCUGg -3'
miRNA:   3'- uaGGCGa--GugGUGgaUGCUCA---UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 73672 0.66 0.962644
Target:  5'- --aCGCcaucaacaUCAgCACCUGCGAGUACuCUa -3'
miRNA:   3'- uagGCG--------AGUgGUGGAUGCUCAUG-GAc -5'
13972 5' -55.4 NC_003521.1 + 162554 0.66 0.962644
Target:  5'- cAUCC--UCACgCGCCU-CGAGUACCUc -3'
miRNA:   3'- -UAGGcgAGUG-GUGGAuGCUCAUGGAc -5'
13972 5' -55.4 NC_003521.1 + 20681 0.66 0.962644
Target:  5'- -gCUGUUCAUCACCUucACGG--GCCUGg -3'
miRNA:   3'- uaGGCGAGUGGUGGA--UGCUcaUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 201383 0.66 0.962644
Target:  5'- cGUCCccgggaGCcacggCGCCGCCUACGGGacuggacgGCCUGu -3'
miRNA:   3'- -UAGG------CGa----GUGGUGGAUGCUCa-------UGGAC- -5'
13972 5' -55.4 NC_003521.1 + 13197 0.66 0.959181
Target:  5'- -gCCGCUCggGCCGCCgugUugGAGgGCCg- -3'
miRNA:   3'- uaGGCGAG--UGGUGG---AugCUCaUGGac -5'
13972 5' -55.4 NC_003521.1 + 14324 0.66 0.959181
Target:  5'- uAUUCGCgCAUCuacGCCUACGAcacccgcgaccaGUACCUGg -3'
miRNA:   3'- -UAGGCGaGUGG---UGGAUGCU------------CAUGGAC- -5'
13972 5' -55.4 NC_003521.1 + 132540 0.66 0.959181
Target:  5'- -aCCGC-CACCACCgcccuCG-GUGCCg- -3'
miRNA:   3'- uaGGCGaGUGGUGGau---GCuCAUGGac -5'
13972 5' -55.4 NC_003521.1 + 205879 0.66 0.955504
Target:  5'- cUCUGCgugCGCCGCgaCUACGAGggucugcgccgcUACCUGc -3'
miRNA:   3'- uAGGCGa--GUGGUG--GAUGCUC------------AUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.