miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 5' -55.2 NC_003521.1 + 123567 0.69 0.854026
Target:  5'- cGaCGGCGGUgGCGGGaugGCGGcgGCGCCGg -3'
miRNA:   3'- aC-GUCGUCAgCGUCCa--UGUC--UGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 180019 0.7 0.829983
Target:  5'- aGCAGCGGcUCGUAGGagACGGG-ACCGu -3'
miRNA:   3'- aCGUCGUC-AGCGUCCa-UGUCUgUGGU- -5'
13973 5' -55.2 NC_003521.1 + 44078 0.72 0.720175
Target:  5'- gGCAGCAGac---GGUGCAGGCGCCGc -3'
miRNA:   3'- aCGUCGUCagcguCCAUGUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 102772 0.76 0.520288
Target:  5'- cGCGGCGGUCGCGGGcgACccACGCCc -3'
miRNA:   3'- aCGUCGUCAGCGUCCa-UGucUGUGGu -5'
13973 5' -55.2 NC_003521.1 + 52062 0.68 0.903002
Target:  5'- aGCGGCAGaugaCGCGGGgcCGGuACACUu -3'
miRNA:   3'- aCGUCGUCa---GCGUCCauGUC-UGUGGu -5'
13973 5' -55.2 NC_003521.1 + 1885 0.69 0.883308
Target:  5'- cGCAGCuGgCGCAGGUACcgGGACGg-- -3'
miRNA:   3'- aCGUCGuCaGCGUCCAUG--UCUGUggu -5'
13973 5' -55.2 NC_003521.1 + 178960 0.71 0.804358
Target:  5'- cGUGGUGGUCGUcauGG-ACAGGCGCCGc -3'
miRNA:   3'- aCGUCGUCAGCGu--CCaUGUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 183132 0.81 0.288207
Target:  5'- uUGCGGCGGUCGCAuccccGUGCAGAC-CCAg -3'
miRNA:   3'- -ACGUCGUCAGCGUc----CAUGUCUGuGGU- -5'
13973 5' -55.2 NC_003521.1 + 93214 0.69 0.883308
Target:  5'- aGguGCAGUU-CGGGUACcaccuGGGCACCu -3'
miRNA:   3'- aCguCGUCAGcGUCCAUG-----UCUGUGGu -5'
13973 5' -55.2 NC_003521.1 + 16983 0.85 0.165187
Target:  5'- aGCAGCAGcCGCAGGgacaGCAGGCGCCc -3'
miRNA:   3'- aCGUCGUCaGCGUCCa---UGUCUGUGGu -5'
13973 5' -55.2 NC_003521.1 + 107336 0.7 0.824978
Target:  5'- cGCAGCAGcggCGcCAGGUgauccucgaccucggGCGGACACa- -3'
miRNA:   3'- aCGUCGUCa--GC-GUCCA---------------UGUCUGUGgu -5'
13973 5' -55.2 NC_003521.1 + 166495 0.69 0.861655
Target:  5'- gUGCAGguGcUGaGGGUGCAGGCgACCGa -3'
miRNA:   3'- -ACGUCguCaGCgUCCAUGUCUG-UGGU- -5'
13973 5' -55.2 NC_003521.1 + 39213 0.71 0.777362
Target:  5'- cGCAGCAG-CGCGGGcucggggacaGCGGugGCCc -3'
miRNA:   3'- aCGUCGUCaGCGUCCa---------UGUCugUGGu -5'
13973 5' -55.2 NC_003521.1 + 76415 0.72 0.729943
Target:  5'- aGCGGCGGUgUGguGGUGCuGGCgACCGu -3'
miRNA:   3'- aCGUCGUCA-GCguCCAUGuCUG-UGGU- -5'
13973 5' -55.2 NC_003521.1 + 123606 0.73 0.700428
Target:  5'- cGCGGCcGUCaGCGGGUGC-GACAUCu -3'
miRNA:   3'- aCGUCGuCAG-CGUCCAUGuCUGUGGu -5'
13973 5' -55.2 NC_003521.1 + 197983 0.74 0.58959
Target:  5'- uUGCGGUAGUCGCGgucGGUGCAGAaaacgaagagauUGCCGu -3'
miRNA:   3'- -ACGUCGUCAGCGU---CCAUGUCU------------GUGGU- -5'
13973 5' -55.2 NC_003521.1 + 96946 0.68 0.903002
Target:  5'- cGCAGCGGUCGUugcaguccGGGUAgGGcuCGCUg -3'
miRNA:   3'- aCGUCGUCAGCG--------UCCAUgUCu-GUGGu -5'
13973 5' -55.2 NC_003521.1 + 124661 0.68 0.903002
Target:  5'- aGCAGCA---GCAGGUGC--GCACCGg -3'
miRNA:   3'- aCGUCGUcagCGUCCAUGucUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 78589 0.69 0.890096
Target:  5'- aGCGGUgagcGUCGCGGGaagcggAgAGGCACCGa -3'
miRNA:   3'- aCGUCGu---CAGCGUCCa-----UgUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 109344 0.69 0.883308
Target:  5'- gGCAGCAGccggCGCAGGagGCcGACgagGCCGa -3'
miRNA:   3'- aCGUCGUCa---GCGUCCa-UGuCUG---UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.